Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17635

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17630 and SGL_RS17635 are separated by 137 nucleotidesSGL_RS17635 and SGL_RS17640 overlap by 4 nucleotides SGL_RS17630: SGL_RS17630 - glucosylglycerol 3-phosphatase, at 3,409,355 to 3,410,623 _RS17630 SGL_RS17635: SGL_RS17635 - ABC transporter ATP-binding protein, at 3,410,761 to 3,411,852 _RS17635 SGL_RS17640: SGL_RS17640 - family 10 glycosylhydrolase, at 3,411,849 to 3,413,075 _RS17640 Position (kb) 3410 3411 3412Strain fitness (log2 ratio) -2 -1 0 1at 3409.846 kb on - strand, within SGL_RS17630at 3410.064 kb on - strand, within SGL_RS17630at 3410.077 kb on - strand, within SGL_RS17630at 3410.155 kb on + strand, within SGL_RS17630at 3410.165 kb on + strand, within SGL_RS17630at 3410.169 kb on + strand, within SGL_RS17630at 3410.266 kb on - strand, within SGL_RS17630at 3410.317 kb on - strand, within SGL_RS17630at 3410.411 kb on + strand, within SGL_RS17630at 3410.497 kb on + strandat 3410.507 kb on + strandat 3410.512 kb on + strandat 3410.556 kb on + strandat 3410.698 kb on + strandat 3410.980 kb on + strand, within SGL_RS17635at 3411.008 kb on + strand, within SGL_RS17635at 3411.118 kb on - strand, within SGL_RS17635at 3411.187 kb on + strand, within SGL_RS17635at 3411.207 kb on - strand, within SGL_RS17635at 3411.295 kb on + strand, within SGL_RS17635at 3411.295 kb on + strand, within SGL_RS17635at 3411.339 kb on - strand, within SGL_RS17635at 3411.408 kb on - strand, within SGL_RS17635at 3411.410 kb on - strand, within SGL_RS17635at 3411.536 kb on + strand, within SGL_RS17635at 3411.560 kb on + strand, within SGL_RS17635at 3411.766 kb on - strandat 3412.188 kb on - strand, within SGL_RS17640at 3412.463 kb on - strand, within SGL_RS17640at 3412.653 kb on - strand, within SGL_RS17640at 3412.817 kb on - strand, within SGL_RS17640

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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3,409,846 - SGL_RS17630 0.39 -1.7
3,410,064 - SGL_RS17630 0.56 -2.0
3,410,077 - SGL_RS17630 0.57 -1.8
3,410,155 + SGL_RS17630 0.63 -1.5
3,410,165 + SGL_RS17630 0.64 -2.1
3,410,169 + SGL_RS17630 0.64 -2.0
3,410,266 - SGL_RS17630 0.72 -1.8
3,410,317 - SGL_RS17630 0.76 -2.0
3,410,411 + SGL_RS17630 0.83 -2.4
3,410,497 + -2.6
3,410,507 + -1.6
3,410,512 + -2.1
3,410,556 + -2.4
3,410,698 + +0.3
3,410,980 + SGL_RS17635 0.20 -0.9
3,411,008 + SGL_RS17635 0.23 -1.2
3,411,118 - SGL_RS17635 0.33 -0.7
3,411,187 + SGL_RS17635 0.39 -0.6
3,411,207 - SGL_RS17635 0.41 -0.8
3,411,295 + SGL_RS17635 0.49 -0.8
3,411,295 + SGL_RS17635 0.49 -1.4
3,411,339 - SGL_RS17635 0.53 -1.6
3,411,408 - SGL_RS17635 0.59 +0.2
3,411,410 - SGL_RS17635 0.59 -1.5
3,411,536 + SGL_RS17635 0.71 -0.6
3,411,560 + SGL_RS17635 0.73 -1.6
3,411,766 - -1.3
3,412,188 - SGL_RS17640 0.28 +0.0
3,412,463 - SGL_RS17640 0.50 -0.2
3,412,653 - SGL_RS17640 0.66 +0.4
3,412,817 - SGL_RS17640 0.79 -0.5

Or see this region's nucleotide sequence