Experiment: D-Sorbitol 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17530 and SGL_RS17535 are separated by 68 nucleotides SGL_RS17535 and SGL_RS17540 are separated by 144 nucleotides SGL_RS17540 and SGL_RS17545 are separated by 153 nucleotides SGL_RS17545 and SGL_RS17550 are separated by 114 nucleotides
SGL_RS17530: SGL_RS17530 - DUF2231 domain-containing protein, at 3,388,694 to 3,389,326
_RS17530
SGL_RS17535: SGL_RS17535 - DUF2231 domain-containing protein, at 3,389,395 to 3,389,883
_RS17535
SGL_RS17540: SGL_RS17540 - NAD(P)/FAD-dependent oxidoreductase, at 3,390,028 to 3,391,491
_RS17540
SGL_RS17545: SGL_RS17545 - fasciclin domain-containing protein, at 3,391,645 to 3,392,187
_RS17545
SGL_RS17550: SGL_RS17550 - ABC transporter permease DevC, at 3,392,302 to 3,393,453
_RS17550
Position (kb)
3390
3391
3392 Strain fitness (log2 ratio)
-1
0
1 at 3389.091 kb on + strand, within SGL_RS17530 at 3389.096 kb on + strand, within SGL_RS17530 at 3389.099 kb on - strand, within SGL_RS17530 at 3389.104 kb on - strand, within SGL_RS17530 at 3389.266 kb on + strand at 3389.274 kb on - strand at 3389.328 kb on - strand at 3389.400 kb on + strand at 3389.436 kb on + strand at 3389.565 kb on - strand, within SGL_RS17535 at 3389.576 kb on + strand, within SGL_RS17535 at 3389.586 kb on - strand, within SGL_RS17535 at 3389.611 kb on + strand, within SGL_RS17535 at 3389.651 kb on + strand, within SGL_RS17535 at 3389.662 kb on + strand, within SGL_RS17535 at 3389.662 kb on + strand, within SGL_RS17535 at 3389.849 kb on + strand at 3389.857 kb on - strand at 3389.874 kb on + strand at 3390.201 kb on - strand, within SGL_RS17540 at 3390.233 kb on - strand, within SGL_RS17540 at 3390.280 kb on + strand, within SGL_RS17540 at 3390.400 kb on - strand, within SGL_RS17540 at 3390.444 kb on - strand, within SGL_RS17540 at 3390.451 kb on - strand, within SGL_RS17540 at 3390.592 kb on - strand, within SGL_RS17540 at 3390.598 kb on + strand, within SGL_RS17540 at 3390.634 kb on - strand, within SGL_RS17540 at 3390.647 kb on + strand, within SGL_RS17540 at 3390.647 kb on + strand, within SGL_RS17540 at 3390.977 kb on + strand, within SGL_RS17540 at 3391.177 kb on + strand, within SGL_RS17540 at 3391.536 kb on + strand at 3391.668 kb on + strand at 3391.755 kb on + strand, within SGL_RS17545 at 3392.049 kb on + strand, within SGL_RS17545 at 3392.282 kb on + strand at 3392.422 kb on + strand, within SGL_RS17550 at 3392.469 kb on + strand, within SGL_RS17550
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM remove 3,389,091 + SGL_RS17530 0.63 +0.2 3,389,096 + SGL_RS17530 0.64 +0.2 3,389,099 - SGL_RS17530 0.64 -0.6 3,389,104 - SGL_RS17530 0.65 +0.1 3,389,266 + +0.0 3,389,274 - -0.2 3,389,328 - -0.7 3,389,400 + -0.5 3,389,436 + +0.0 3,389,565 - SGL_RS17535 0.35 +0.7 3,389,576 + SGL_RS17535 0.37 -0.1 3,389,586 - SGL_RS17535 0.39 -0.3 3,389,611 + SGL_RS17535 0.44 -0.0 3,389,651 + SGL_RS17535 0.52 -0.0 3,389,662 + SGL_RS17535 0.55 -0.4 3,389,662 + SGL_RS17535 0.55 +0.0 3,389,849 + +0.7 3,389,857 - -0.1 3,389,874 + -0.1 3,390,201 - SGL_RS17540 0.12 +0.6 3,390,233 - SGL_RS17540 0.14 -0.3 3,390,280 + SGL_RS17540 0.17 -0.2 3,390,400 - SGL_RS17540 0.25 -0.1 3,390,444 - SGL_RS17540 0.28 -0.1 3,390,451 - SGL_RS17540 0.29 +0.0 3,390,592 - SGL_RS17540 0.39 +0.1 3,390,598 + SGL_RS17540 0.39 +0.4 3,390,634 - SGL_RS17540 0.41 +0.5 3,390,647 + SGL_RS17540 0.42 -0.1 3,390,647 + SGL_RS17540 0.42 +0.3 3,390,977 + SGL_RS17540 0.65 +0.8 3,391,177 + SGL_RS17540 0.78 +1.1 3,391,536 + +0.4 3,391,668 + -0.5 3,391,755 + SGL_RS17545 0.20 -0.0 3,392,049 + SGL_RS17545 0.74 +0.1 3,392,282 + +0.1 3,392,422 + SGL_RS17550 0.10 -0.8 3,392,469 + SGL_RS17550 0.14 -0.3
Or see this region's nucleotide sequence