Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17540

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17530 and SGL_RS17535 are separated by 68 nucleotidesSGL_RS17535 and SGL_RS17540 are separated by 144 nucleotidesSGL_RS17540 and SGL_RS17545 are separated by 153 nucleotidesSGL_RS17545 and SGL_RS17550 are separated by 114 nucleotides SGL_RS17530: SGL_RS17530 - DUF2231 domain-containing protein, at 3,388,694 to 3,389,326 _RS17530 SGL_RS17535: SGL_RS17535 - DUF2231 domain-containing protein, at 3,389,395 to 3,389,883 _RS17535 SGL_RS17540: SGL_RS17540 - NAD(P)/FAD-dependent oxidoreductase, at 3,390,028 to 3,391,491 _RS17540 SGL_RS17545: SGL_RS17545 - fasciclin domain-containing protein, at 3,391,645 to 3,392,187 _RS17545 SGL_RS17550: SGL_RS17550 - ABC transporter permease DevC, at 3,392,302 to 3,393,453 _RS17550 Position (kb) 3390 3391 3392Strain fitness (log2 ratio) -1 0 1at 3389.091 kb on + strand, within SGL_RS17530at 3389.096 kb on + strand, within SGL_RS17530at 3389.099 kb on - strand, within SGL_RS17530at 3389.104 kb on - strand, within SGL_RS17530at 3389.266 kb on + strandat 3389.274 kb on - strandat 3389.328 kb on - strandat 3389.400 kb on + strandat 3389.436 kb on + strandat 3389.565 kb on - strand, within SGL_RS17535at 3389.576 kb on + strand, within SGL_RS17535at 3389.586 kb on - strand, within SGL_RS17535at 3389.611 kb on + strand, within SGL_RS17535at 3389.651 kb on + strand, within SGL_RS17535at 3389.662 kb on + strand, within SGL_RS17535at 3389.662 kb on + strand, within SGL_RS17535at 3389.849 kb on + strandat 3389.857 kb on - strandat 3389.874 kb on + strandat 3390.201 kb on - strand, within SGL_RS17540at 3390.233 kb on - strand, within SGL_RS17540at 3390.280 kb on + strand, within SGL_RS17540at 3390.400 kb on - strand, within SGL_RS17540at 3390.444 kb on - strand, within SGL_RS17540at 3390.451 kb on - strand, within SGL_RS17540at 3390.592 kb on - strand, within SGL_RS17540at 3390.598 kb on + strand, within SGL_RS17540at 3390.634 kb on - strand, within SGL_RS17540at 3390.647 kb on + strand, within SGL_RS17540at 3390.647 kb on + strand, within SGL_RS17540at 3390.977 kb on + strand, within SGL_RS17540at 3391.177 kb on + strand, within SGL_RS17540at 3391.536 kb on + strandat 3391.668 kb on + strandat 3391.755 kb on + strand, within SGL_RS17545at 3392.049 kb on + strand, within SGL_RS17545at 3392.282 kb on + strandat 3392.422 kb on + strand, within SGL_RS17550at 3392.469 kb on + strand, within SGL_RS17550

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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3,389,091 + SGL_RS17530 0.63 +0.2
3,389,096 + SGL_RS17530 0.64 +0.2
3,389,099 - SGL_RS17530 0.64 -0.6
3,389,104 - SGL_RS17530 0.65 +0.1
3,389,266 + +0.0
3,389,274 - -0.2
3,389,328 - -0.7
3,389,400 + -0.5
3,389,436 + +0.0
3,389,565 - SGL_RS17535 0.35 +0.7
3,389,576 + SGL_RS17535 0.37 -0.1
3,389,586 - SGL_RS17535 0.39 -0.3
3,389,611 + SGL_RS17535 0.44 -0.0
3,389,651 + SGL_RS17535 0.52 -0.0
3,389,662 + SGL_RS17535 0.55 -0.4
3,389,662 + SGL_RS17535 0.55 +0.0
3,389,849 + +0.7
3,389,857 - -0.1
3,389,874 + -0.1
3,390,201 - SGL_RS17540 0.12 +0.6
3,390,233 - SGL_RS17540 0.14 -0.3
3,390,280 + SGL_RS17540 0.17 -0.2
3,390,400 - SGL_RS17540 0.25 -0.1
3,390,444 - SGL_RS17540 0.28 -0.1
3,390,451 - SGL_RS17540 0.29 +0.0
3,390,592 - SGL_RS17540 0.39 +0.1
3,390,598 + SGL_RS17540 0.39 +0.4
3,390,634 - SGL_RS17540 0.41 +0.5
3,390,647 + SGL_RS17540 0.42 -0.1
3,390,647 + SGL_RS17540 0.42 +0.3
3,390,977 + SGL_RS17540 0.65 +0.8
3,391,177 + SGL_RS17540 0.78 +1.1
3,391,536 + +0.4
3,391,668 + -0.5
3,391,755 + SGL_RS17545 0.20 -0.0
3,392,049 + SGL_RS17545 0.74 +0.1
3,392,282 + +0.1
3,392,422 + SGL_RS17550 0.10 -0.8
3,392,469 + SGL_RS17550 0.14 -0.3

Or see this region's nucleotide sequence