Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17080

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17070 and SGL_RS17075 are separated by 60 nucleotidesSGL_RS17075 and SGL_RS17080 are separated by 117 nucleotidesSGL_RS17080 and SGL_RS17085 are separated by 240 nucleotides SGL_RS17070: SGL_RS17070 - DUF3146 family protein, at 3,283,104 to 3,283,406 _RS17070 SGL_RS17075: SGL_RS17075 - recombination mediator RecR, at 3,283,467 to 3,284,165 _RS17075 SGL_RS17080: SGL_RS17080 - hypothetical protein, at 3,284,283 to 3,284,810 _RS17080 SGL_RS17085: SGL_RS17085 - TIGR00300 family protein, at 3,285,051 to 3,287,168 _RS17085 Position (kb) 3284 3285Strain fitness (log2 ratio) -2 -1 0 1at 3283.303 kb on - strand, within SGL_RS17070at 3283.494 kb on + strandat 3284.376 kb on - strand, within SGL_RS17080at 3284.464 kb on + strand, within SGL_RS17080at 3284.896 kb on - strandat 3284.941 kb on + strandat 3285.023 kb on + strandat 3285.069 kb on + strandat 3285.077 kb on - strandat 3285.077 kb on - strandat 3285.077 kb on - strandat 3285.242 kb on + strandat 3285.518 kb on - strand, within SGL_RS17085at 3285.524 kb on - strand, within SGL_RS17085at 3285.572 kb on - strand, within SGL_RS17085at 3285.653 kb on - strand, within SGL_RS17085at 3285.653 kb on - strand, within SGL_RS17085at 3285.653 kb on - strand, within SGL_RS17085at 3285.656 kb on + strand, within SGL_RS17085at 3285.666 kb on + strand, within SGL_RS17085

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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3,283,303 - SGL_RS17070 0.66 -0.1
3,283,494 + -0.1
3,284,376 - SGL_RS17080 0.18 -1.2
3,284,464 + SGL_RS17080 0.34 -1.5
3,284,896 - -0.9
3,284,941 + +0.4
3,285,023 + -0.1
3,285,069 + -0.2
3,285,077 - -0.4
3,285,077 - -0.1
3,285,077 - -0.5
3,285,242 + -0.8
3,285,518 - SGL_RS17085 0.22 -1.9
3,285,524 - SGL_RS17085 0.22 -0.6
3,285,572 - SGL_RS17085 0.25 -0.8
3,285,653 - SGL_RS17085 0.28 -0.6
3,285,653 - SGL_RS17085 0.28 -0.7
3,285,653 - SGL_RS17085 0.28 -1.0
3,285,656 + SGL_RS17085 0.29 -0.9
3,285,666 + SGL_RS17085 0.29 -0.6

Or see this region's nucleotide sequence