Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16865

Experiment: D-Sorbitol 500 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS16860 and SGL_RS16865 are separated by 18 nucleotidesSGL_RS16865 and SGL_RS16870 overlap by 4 nucleotides SGL_RS16860: SGL_RS16860 - small ribosomal subunit biogenesis GTPase RsgA, at 3,235,746 to 3,236,855 _RS16860 SGL_RS16865: SGL_RS16865 - sulfurtransferase TusA family protein, at 3,236,874 to 3,237,128 _RS16865 SGL_RS16870: SGL_RS16870 - molecular chaperone DnaJ, at 3,237,125 to 3,238,258 _RS16870 Position (kb) 3236 3237 3238Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3235.989 kb on + strand, within SGL_RS16860at 3235.997 kb on + strand, within SGL_RS16860at 3235.997 kb on + strand, within SGL_RS16860at 3236.005 kb on - strand, within SGL_RS16860at 3236.005 kb on - strand, within SGL_RS16860at 3236.282 kb on + strand, within SGL_RS16860at 3236.297 kb on + strand, within SGL_RS16860at 3236.324 kb on - strand, within SGL_RS16860at 3236.382 kb on + strand, within SGL_RS16860at 3236.568 kb on - strand, within SGL_RS16860at 3236.651 kb on + strand, within SGL_RS16860at 3236.656 kb on + strand, within SGL_RS16860at 3236.857 kb on + strandat 3236.857 kb on + strandat 3236.922 kb on + strand, within SGL_RS16865at 3236.956 kb on - strand, within SGL_RS16865at 3237.134 kb on + strandat 3237.330 kb on + strand, within SGL_RS16870

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
remove
3,235,989 + SGL_RS16860 0.22 -5.4
3,235,997 + SGL_RS16860 0.23 -6.0
3,235,997 + SGL_RS16860 0.23 -3.3
3,236,005 - SGL_RS16860 0.23 -5.8
3,236,005 - SGL_RS16860 0.23 -5.4
3,236,282 + SGL_RS16860 0.48 -6.3
3,236,297 + SGL_RS16860 0.50 -4.7
3,236,324 - SGL_RS16860 0.52 -5.0
3,236,382 + SGL_RS16860 0.57 -5.5
3,236,568 - SGL_RS16860 0.74 -4.3
3,236,651 + SGL_RS16860 0.82 -2.2
3,236,656 + SGL_RS16860 0.82 -6.0
3,236,857 + +0.2
3,236,857 + +0.2
3,236,922 + SGL_RS16865 0.19 -4.9
3,236,956 - SGL_RS16865 0.32 -5.5
3,237,134 + -1.7
3,237,330 + SGL_RS16870 0.18 -3.9

Or see this region's nucleotide sequence