Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16650

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16645 and SGL_RS16650 overlap by 1 nucleotidesSGL_RS16650 and SGL_RS16655 overlap by 4 nucleotides SGL_RS16645: SGL_RS16645 - sugar ABC transporter permease, at 3,189,797 to 3,190,768 _RS16645 SGL_RS16650: SGL_RS16650 - carbohydrate ABC transporter permease, at 3,190,768 to 3,191,664 _RS16650 SGL_RS16655: SGL_RS16655 - phytoene/squalene synthase family protein, at 3,191,661 to 3,192,476 _RS16655 Position (kb) 3190 3191 3192Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3189.930 kb on - strand, within SGL_RS16645at 3190.122 kb on - strand, within SGL_RS16645at 3190.136 kb on - strand, within SGL_RS16645at 3190.222 kb on - strand, within SGL_RS16645at 3190.313 kb on + strand, within SGL_RS16645at 3190.430 kb on + strand, within SGL_RS16645at 3190.453 kb on + strand, within SGL_RS16645at 3190.532 kb on - strand, within SGL_RS16645at 3190.855 kb on + strandat 3190.889 kb on + strand, within SGL_RS16650at 3190.945 kb on - strand, within SGL_RS16650at 3190.992 kb on + strand, within SGL_RS16650at 3191.221 kb on + strand, within SGL_RS16650at 3191.250 kb on + strand, within SGL_RS16650at 3191.555 kb on - strand, within SGL_RS16650at 3191.590 kb on - strandat 3191.689 kb on + strandat 3191.716 kb on + strandat 3191.724 kb on - strandat 3191.943 kb on - strand, within SGL_RS16655at 3191.981 kb on + strand, within SGL_RS16655at 3192.185 kb on + strand, within SGL_RS16655at 3192.275 kb on + strand, within SGL_RS16655at 3192.523 kb on - strandat 3192.528 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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3,189,930 - SGL_RS16645 0.14 -0.8
3,190,122 - SGL_RS16645 0.33 -1.3
3,190,136 - SGL_RS16645 0.35 -1.4
3,190,222 - SGL_RS16645 0.44 -1.4
3,190,313 + SGL_RS16645 0.53 -1.6
3,190,430 + SGL_RS16645 0.65 -1.5
3,190,453 + SGL_RS16645 0.67 -1.0
3,190,532 - SGL_RS16645 0.76 -1.6
3,190,855 + -1.2
3,190,889 + SGL_RS16650 0.13 -1.2
3,190,945 - SGL_RS16650 0.20 -0.9
3,190,992 + SGL_RS16650 0.25 -1.1
3,191,221 + SGL_RS16650 0.51 -1.4
3,191,250 + SGL_RS16650 0.54 -1.6
3,191,555 - SGL_RS16650 0.88 -2.8
3,191,590 - -0.1
3,191,689 + -4.2
3,191,716 + -2.8
3,191,724 - -4.6
3,191,943 - SGL_RS16655 0.35 -2.5
3,191,981 + SGL_RS16655 0.39 -3.3
3,192,185 + SGL_RS16655 0.64 -3.5
3,192,275 + SGL_RS16655 0.75 -2.5
3,192,523 - -4.0
3,192,528 - -2.8

Or see this region's nucleotide sequence