Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16645

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16640 and SGL_RS16645 are separated by 48 nucleotidesSGL_RS16645 and SGL_RS16650 overlap by 1 nucleotidesSGL_RS16650 and SGL_RS16655 overlap by 4 nucleotides SGL_RS16640: SGL_RS16640 - ABC transporter substrate-binding protein, at 3,188,483 to 3,189,748 _RS16640 SGL_RS16645: SGL_RS16645 - sugar ABC transporter permease, at 3,189,797 to 3,190,768 _RS16645 SGL_RS16650: SGL_RS16650 - carbohydrate ABC transporter permease, at 3,190,768 to 3,191,664 _RS16650 SGL_RS16655: SGL_RS16655 - phytoene/squalene synthase family protein, at 3,191,661 to 3,192,476 _RS16655 Position (kb) 3189 3190 3191Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3188.836 kb on + strand, within SGL_RS16640at 3188.836 kb on + strand, within SGL_RS16640at 3188.836 kb on + strand, within SGL_RS16640at 3188.889 kb on + strand, within SGL_RS16640at 3189.005 kb on - strand, within SGL_RS16640at 3189.075 kb on - strand, within SGL_RS16640at 3189.120 kb on + strand, within SGL_RS16640at 3189.128 kb on - strand, within SGL_RS16640at 3189.240 kb on - strand, within SGL_RS16640at 3189.297 kb on + strand, within SGL_RS16640at 3189.344 kb on + strand, within SGL_RS16640at 3189.401 kb on + strand, within SGL_RS16640at 3189.403 kb on - strand, within SGL_RS16640at 3189.413 kb on - strand, within SGL_RS16640at 3189.584 kb on - strand, within SGL_RS16640at 3189.691 kb on - strandat 3189.930 kb on - strand, within SGL_RS16645at 3190.122 kb on - strand, within SGL_RS16645at 3190.136 kb on - strand, within SGL_RS16645at 3190.222 kb on - strand, within SGL_RS16645at 3190.313 kb on + strand, within SGL_RS16645at 3190.430 kb on + strand, within SGL_RS16645at 3190.453 kb on + strand, within SGL_RS16645at 3190.532 kb on - strand, within SGL_RS16645at 3190.855 kb on + strandat 3190.889 kb on + strand, within SGL_RS16650at 3190.945 kb on - strand, within SGL_RS16650at 3190.992 kb on + strand, within SGL_RS16650at 3191.221 kb on + strand, within SGL_RS16650at 3191.250 kb on + strand, within SGL_RS16650at 3191.555 kb on - strand, within SGL_RS16650at 3191.590 kb on - strandat 3191.689 kb on + strandat 3191.716 kb on + strandat 3191.724 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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3,188,836 + SGL_RS16640 0.28 -1.6
3,188,836 + SGL_RS16640 0.28 -1.9
3,188,836 + SGL_RS16640 0.28 -1.5
3,188,889 + SGL_RS16640 0.32 -0.9
3,189,005 - SGL_RS16640 0.41 -1.2
3,189,075 - SGL_RS16640 0.47 -1.3
3,189,120 + SGL_RS16640 0.50 -1.5
3,189,128 - SGL_RS16640 0.51 -1.5
3,189,240 - SGL_RS16640 0.60 -1.0
3,189,297 + SGL_RS16640 0.64 -1.6
3,189,344 + SGL_RS16640 0.68 -1.2
3,189,401 + SGL_RS16640 0.73 -1.4
3,189,403 - SGL_RS16640 0.73 -1.1
3,189,413 - SGL_RS16640 0.73 -1.2
3,189,584 - SGL_RS16640 0.87 -0.8
3,189,691 - -1.5
3,189,930 - SGL_RS16645 0.14 -0.8
3,190,122 - SGL_RS16645 0.33 -1.3
3,190,136 - SGL_RS16645 0.35 -1.4
3,190,222 - SGL_RS16645 0.44 -1.4
3,190,313 + SGL_RS16645 0.53 -1.6
3,190,430 + SGL_RS16645 0.65 -1.5
3,190,453 + SGL_RS16645 0.67 -1.0
3,190,532 - SGL_RS16645 0.76 -1.6
3,190,855 + -1.2
3,190,889 + SGL_RS16650 0.13 -1.2
3,190,945 - SGL_RS16650 0.20 -0.9
3,190,992 + SGL_RS16650 0.25 -1.1
3,191,221 + SGL_RS16650 0.51 -1.4
3,191,250 + SGL_RS16650 0.54 -1.6
3,191,555 - SGL_RS16650 0.88 -2.8
3,191,590 - -0.1
3,191,689 + -4.2
3,191,716 + -2.8
3,191,724 - -4.6

Or see this region's nucleotide sequence