Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16640

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16630 and SGL_RS20180 are separated by 61 nucleotidesSGL_RS20180 and SGL_RS16640 are separated by 255 nucleotidesSGL_RS16640 and SGL_RS16645 are separated by 48 nucleotides SGL_RS16630: SGL_RS16630 - MBL fold metallo-hydrolase, at 3,186,379 to 3,188,043 _RS16630 SGL_RS20180: SGL_RS20180 - membrane protein, at 3,188,105 to 3,188,227 _RS20180 SGL_RS16640: SGL_RS16640 - ABC transporter substrate-binding protein, at 3,188,483 to 3,189,748 _RS16640 SGL_RS16645: SGL_RS16645 - sugar ABC transporter permease, at 3,189,797 to 3,190,768 _RS16645 Position (kb) 3188 3189 3190Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 3187.598 kb on - strand, within SGL_RS16630at 3187.902 kb on + strandat 3187.915 kb on + strandat 3187.933 kb on - strandat 3187.947 kb on + strandat 3187.952 kb on + strandat 3187.977 kb on - strandat 3188.062 kb on + strandat 3188.202 kb on - strand, within SGL_RS20180at 3188.279 kb on + strandat 3188.320 kb on - strandat 3188.544 kb on + strandat 3188.544 kb on + strandat 3188.552 kb on - strandat 3188.552 kb on - strandat 3188.557 kb on - strandat 3188.602 kb on - strandat 3188.633 kb on + strand, within SGL_RS16640at 3188.638 kb on - strand, within SGL_RS16640at 3188.658 kb on + strand, within SGL_RS16640at 3188.721 kb on - strand, within SGL_RS16640at 3188.836 kb on + strand, within SGL_RS16640at 3188.836 kb on + strand, within SGL_RS16640at 3188.836 kb on + strand, within SGL_RS16640at 3188.889 kb on + strand, within SGL_RS16640at 3189.005 kb on - strand, within SGL_RS16640at 3189.075 kb on - strand, within SGL_RS16640at 3189.120 kb on + strand, within SGL_RS16640at 3189.128 kb on - strand, within SGL_RS16640at 3189.240 kb on - strand, within SGL_RS16640at 3189.297 kb on + strand, within SGL_RS16640at 3189.344 kb on + strand, within SGL_RS16640at 3189.401 kb on + strand, within SGL_RS16640at 3189.403 kb on - strand, within SGL_RS16640at 3189.413 kb on - strand, within SGL_RS16640at 3189.584 kb on - strand, within SGL_RS16640at 3189.691 kb on - strandat 3189.930 kb on - strand, within SGL_RS16645at 3190.122 kb on - strand, within SGL_RS16645at 3190.136 kb on - strand, within SGL_RS16645at 3190.222 kb on - strand, within SGL_RS16645at 3190.313 kb on + strand, within SGL_RS16645at 3190.430 kb on + strand, within SGL_RS16645at 3190.453 kb on + strand, within SGL_RS16645at 3190.532 kb on - strand, within SGL_RS16645

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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3,187,598 - SGL_RS16630 0.73 -6.1
3,187,902 + -8.0
3,187,915 + -8.0
3,187,933 - -6.0
3,187,947 + -5.6
3,187,952 + -8.2
3,187,977 - -5.8
3,188,062 + -0.0
3,188,202 - SGL_RS20180 0.79 -3.7
3,188,279 + +0.3
3,188,320 - -0.4
3,188,544 + -0.9
3,188,544 + -0.7
3,188,552 - -0.6
3,188,552 - -1.3
3,188,557 - -1.0
3,188,602 - -0.8
3,188,633 + SGL_RS16640 0.12 -1.5
3,188,638 - SGL_RS16640 0.12 -1.1
3,188,658 + SGL_RS16640 0.14 -1.9
3,188,721 - SGL_RS16640 0.19 -1.8
3,188,836 + SGL_RS16640 0.28 -1.6
3,188,836 + SGL_RS16640 0.28 -1.9
3,188,836 + SGL_RS16640 0.28 -1.5
3,188,889 + SGL_RS16640 0.32 -0.9
3,189,005 - SGL_RS16640 0.41 -1.2
3,189,075 - SGL_RS16640 0.47 -1.3
3,189,120 + SGL_RS16640 0.50 -1.5
3,189,128 - SGL_RS16640 0.51 -1.5
3,189,240 - SGL_RS16640 0.60 -1.0
3,189,297 + SGL_RS16640 0.64 -1.6
3,189,344 + SGL_RS16640 0.68 -1.2
3,189,401 + SGL_RS16640 0.73 -1.4
3,189,403 - SGL_RS16640 0.73 -1.1
3,189,413 - SGL_RS16640 0.73 -1.2
3,189,584 - SGL_RS16640 0.87 -0.8
3,189,691 - -1.5
3,189,930 - SGL_RS16645 0.14 -0.8
3,190,122 - SGL_RS16645 0.33 -1.3
3,190,136 - SGL_RS16645 0.35 -1.4
3,190,222 - SGL_RS16645 0.44 -1.4
3,190,313 + SGL_RS16645 0.53 -1.6
3,190,430 + SGL_RS16645 0.65 -1.5
3,190,453 + SGL_RS16645 0.67 -1.0
3,190,532 - SGL_RS16645 0.76 -1.6

Or see this region's nucleotide sequence