Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16630

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16625 and SGL_RS16630 are separated by 128 nucleotidesSGL_RS16630 and SGL_RS20180 are separated by 61 nucleotidesSGL_RS20180 and SGL_RS16640 are separated by 255 nucleotides SGL_RS16625: SGL_RS16625 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase, at 3,184,733 to 3,186,250 _RS16625 SGL_RS16630: SGL_RS16630 - MBL fold metallo-hydrolase, at 3,186,379 to 3,188,043 _RS16630 SGL_RS20180: SGL_RS20180 - membrane protein, at 3,188,105 to 3,188,227 _RS20180 SGL_RS16640: SGL_RS16640 - ABC transporter substrate-binding protein, at 3,188,483 to 3,189,748 _RS16640 Position (kb) 3186 3187 3188 3189Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 3186.323 kb on + strandat 3186.429 kb on + strandat 3186.429 kb on + strandat 3186.437 kb on - strandat 3186.437 kb on - strandat 3186.531 kb on + strandat 3186.576 kb on + strand, within SGL_RS16630at 3186.674 kb on + strand, within SGL_RS16630at 3186.710 kb on - strand, within SGL_RS16630at 3186.741 kb on + strand, within SGL_RS16630at 3186.746 kb on + strand, within SGL_RS16630at 3186.754 kb on - strand, within SGL_RS16630at 3186.778 kb on - strand, within SGL_RS16630at 3186.885 kb on - strand, within SGL_RS16630at 3186.903 kb on + strand, within SGL_RS16630at 3187.026 kb on + strand, within SGL_RS16630at 3187.028 kb on + strand, within SGL_RS16630at 3187.154 kb on + strand, within SGL_RS16630at 3187.328 kb on - strand, within SGL_RS16630at 3187.355 kb on + strand, within SGL_RS16630at 3187.363 kb on + strand, within SGL_RS16630at 3187.385 kb on + strand, within SGL_RS16630at 3187.399 kb on + strand, within SGL_RS16630at 3187.399 kb on + strand, within SGL_RS16630at 3187.598 kb on - strand, within SGL_RS16630at 3187.902 kb on + strandat 3187.915 kb on + strandat 3187.933 kb on - strandat 3187.947 kb on + strandat 3187.952 kb on + strandat 3187.977 kb on - strandat 3188.062 kb on + strandat 3188.202 kb on - strand, within SGL_RS20180at 3188.279 kb on + strandat 3188.320 kb on - strandat 3188.544 kb on + strandat 3188.544 kb on + strandat 3188.552 kb on - strandat 3188.552 kb on - strandat 3188.557 kb on - strandat 3188.602 kb on - strandat 3188.633 kb on + strand, within SGL_RS16640at 3188.638 kb on - strand, within SGL_RS16640at 3188.658 kb on + strand, within SGL_RS16640at 3188.721 kb on - strand, within SGL_RS16640at 3188.836 kb on + strand, within SGL_RS16640at 3188.836 kb on + strand, within SGL_RS16640at 3188.836 kb on + strand, within SGL_RS16640at 3188.889 kb on + strand, within SGL_RS16640at 3189.005 kb on - strand, within SGL_RS16640

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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3,186,323 + +0.3
3,186,429 + -7.0
3,186,429 + -5.5
3,186,437 - -6.1
3,186,437 - -6.5
3,186,531 + -7.8
3,186,576 + SGL_RS16630 0.12 -5.0
3,186,674 + SGL_RS16630 0.18 -8.5
3,186,710 - SGL_RS16630 0.20 -6.1
3,186,741 + SGL_RS16630 0.22 -7.4
3,186,746 + SGL_RS16630 0.22 -4.3
3,186,754 - SGL_RS16630 0.23 -5.2
3,186,778 - SGL_RS16630 0.24 -5.8
3,186,885 - SGL_RS16630 0.30 -6.8
3,186,903 + SGL_RS16630 0.31 -7.5
3,187,026 + SGL_RS16630 0.39 -7.6
3,187,028 + SGL_RS16630 0.39 -7.5
3,187,154 + SGL_RS16630 0.47 -5.6
3,187,328 - SGL_RS16630 0.57 -7.7
3,187,355 + SGL_RS16630 0.59 -4.1
3,187,363 + SGL_RS16630 0.59 -6.3
3,187,385 + SGL_RS16630 0.60 -7.9
3,187,399 + SGL_RS16630 0.61 -7.1
3,187,399 + SGL_RS16630 0.61 -3.2
3,187,598 - SGL_RS16630 0.73 -6.1
3,187,902 + -8.0
3,187,915 + -8.0
3,187,933 - -6.0
3,187,947 + -5.6
3,187,952 + -8.2
3,187,977 - -5.8
3,188,062 + -0.0
3,188,202 - SGL_RS20180 0.79 -3.7
3,188,279 + +0.3
3,188,320 - -0.4
3,188,544 + -0.9
3,188,544 + -0.7
3,188,552 - -0.6
3,188,552 - -1.3
3,188,557 - -1.0
3,188,602 - -0.8
3,188,633 + SGL_RS16640 0.12 -1.5
3,188,638 - SGL_RS16640 0.12 -1.1
3,188,658 + SGL_RS16640 0.14 -1.9
3,188,721 - SGL_RS16640 0.19 -1.8
3,188,836 + SGL_RS16640 0.28 -1.6
3,188,836 + SGL_RS16640 0.28 -1.9
3,188,836 + SGL_RS16640 0.28 -1.5
3,188,889 + SGL_RS16640 0.32 -0.9
3,189,005 - SGL_RS16640 0.41 -1.2

Or see this region's nucleotide sequence