Experiment: D-Sorbitol 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16330 and SGL_RS16335 are separated by 70 nucleotides SGL_RS16335 and SGL_RS16340 are separated by 191 nucleotides
SGL_RS16330: SGL_RS16330 - NADP-specific glutamate dehydrogenase, at 3,112,517 to 3,113,803
_RS16330
SGL_RS16335: SGL_RS16335 - preQ(1) synthase, at 3,113,874 to 3,114,287
_RS16335
SGL_RS16340: SGL_RS16340 - lysylphosphatidylglycerol synthase domain-containing protein, at 3,114,479 to 3,115,447
_RS16340
Position (kb)
3113
3114
3115 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3112.888 kb on + strand, within SGL_RS16330 at 3112.949 kb on - strand, within SGL_RS16330 at 3112.956 kb on + strand, within SGL_RS16330 at 3112.985 kb on + strand, within SGL_RS16330 at 3113.021 kb on + strand, within SGL_RS16330 at 3113.077 kb on + strand, within SGL_RS16330 at 3113.102 kb on + strand, within SGL_RS16330 at 3113.124 kb on - strand, within SGL_RS16330 at 3113.156 kb on + strand, within SGL_RS16330 at 3113.318 kb on + strand, within SGL_RS16330 at 3113.318 kb on + strand, within SGL_RS16330 at 3113.407 kb on + strand, within SGL_RS16330 at 3113.415 kb on - strand, within SGL_RS16330 at 3113.562 kb on + strand, within SGL_RS16330 at 3113.570 kb on - strand, within SGL_RS16330 at 3113.603 kb on - strand, within SGL_RS16330 at 3113.605 kb on - strand, within SGL_RS16330 at 3113.691 kb on - strand at 3113.726 kb on + strand at 3113.729 kb on - strand at 3113.734 kb on - strand at 3113.781 kb on - strand at 3113.783 kb on - strand at 3113.835 kb on - strand at 3113.843 kb on + strand at 3113.875 kb on - strand at 3113.988 kb on + strand, within SGL_RS16335 at 3113.998 kb on - strand, within SGL_RS16335 at 3114.027 kb on + strand, within SGL_RS16335 at 3114.052 kb on + strand, within SGL_RS16335 at 3114.065 kb on + strand, within SGL_RS16335 at 3114.065 kb on + strand, within SGL_RS16335 at 3114.073 kb on - strand, within SGL_RS16335 at 3114.073 kb on - strand, within SGL_RS16335 at 3114.249 kb on - strand at 3114.483 kb on - strand at 3114.483 kb on - strand at 3114.528 kb on - strand at 3114.533 kb on - strand at 3114.582 kb on - strand, within SGL_RS16340 at 3114.671 kb on - strand, within SGL_RS16340 at 3114.691 kb on + strand, within SGL_RS16340 at 3114.705 kb on - strand, within SGL_RS16340 at 3114.707 kb on + strand, within SGL_RS16340 at 3114.722 kb on - strand, within SGL_RS16340 at 3114.787 kb on + strand, within SGL_RS16340 at 3114.854 kb on - strand, within SGL_RS16340 at 3114.856 kb on + strand, within SGL_RS16340 at 3115.053 kb on - strand, within SGL_RS16340 at 3115.158 kb on + strand, within SGL_RS16340 at 3115.161 kb on - strand, within SGL_RS16340 at 3115.161 kb on - strand, within SGL_RS16340 at 3115.238 kb on + strand, within SGL_RS16340 at 3115.238 kb on - strand, within SGL_RS16340 at 3115.287 kb on + strand, within SGL_RS16340
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM remove 3,112,888 + SGL_RS16330 0.29 +1.0 3,112,949 - SGL_RS16330 0.34 +0.2 3,112,956 + SGL_RS16330 0.34 +0.5 3,112,985 + SGL_RS16330 0.36 -0.0 3,113,021 + SGL_RS16330 0.39 -0.2 3,113,077 + SGL_RS16330 0.44 -0.2 3,113,102 + SGL_RS16330 0.45 -0.2 3,113,124 - SGL_RS16330 0.47 -0.3 3,113,156 + SGL_RS16330 0.50 -0.0 3,113,318 + SGL_RS16330 0.62 +0.7 3,113,318 + SGL_RS16330 0.62 +0.3 3,113,407 + SGL_RS16330 0.69 -0.2 3,113,415 - SGL_RS16330 0.70 +0.1 3,113,562 + SGL_RS16330 0.81 -0.0 3,113,570 - SGL_RS16330 0.82 -0.2 3,113,603 - SGL_RS16330 0.84 -0.0 3,113,605 - SGL_RS16330 0.85 +0.4 3,113,691 - +0.1 3,113,726 + +0.7 3,113,729 - -0.1 3,113,734 - +0.1 3,113,781 - -0.2 3,113,783 - +0.0 3,113,835 - -3.6 3,113,843 + -1.1 3,113,875 - +0.2 3,113,988 + SGL_RS16335 0.28 -3.5 3,113,998 - SGL_RS16335 0.30 -2.2 3,114,027 + SGL_RS16335 0.37 -2.9 3,114,052 + SGL_RS16335 0.43 -2.3 3,114,065 + SGL_RS16335 0.46 -2.5 3,114,065 + SGL_RS16335 0.46 -3.2 3,114,073 - SGL_RS16335 0.48 -4.1 3,114,073 - SGL_RS16335 0.48 -3.4 3,114,249 - -3.0 3,114,483 - +0.1 3,114,483 - +0.6 3,114,528 - +0.1 3,114,533 - +0.6 3,114,582 - SGL_RS16340 0.11 +0.1 3,114,671 - SGL_RS16340 0.20 +0.2 3,114,691 + SGL_RS16340 0.22 -0.3 3,114,705 - SGL_RS16340 0.23 +0.2 3,114,707 + SGL_RS16340 0.24 -0.0 3,114,722 - SGL_RS16340 0.25 -0.3 3,114,787 + SGL_RS16340 0.32 +0.0 3,114,854 - SGL_RS16340 0.39 +0.1 3,114,856 + SGL_RS16340 0.39 +0.9 3,115,053 - SGL_RS16340 0.59 -0.1 3,115,158 + SGL_RS16340 0.70 +0.2 3,115,161 - SGL_RS16340 0.70 -0.0 3,115,161 - SGL_RS16340 0.70 +0.5 3,115,238 + SGL_RS16340 0.78 +0.5 3,115,238 - SGL_RS16340 0.78 -0.3 3,115,287 + SGL_RS16340 0.83 -0.1
Or see this region's nucleotide sequence