Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16335

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16330 and SGL_RS16335 are separated by 70 nucleotidesSGL_RS16335 and SGL_RS16340 are separated by 191 nucleotides SGL_RS16330: SGL_RS16330 - NADP-specific glutamate dehydrogenase, at 3,112,517 to 3,113,803 _RS16330 SGL_RS16335: SGL_RS16335 - preQ(1) synthase, at 3,113,874 to 3,114,287 _RS16335 SGL_RS16340: SGL_RS16340 - lysylphosphatidylglycerol synthase domain-containing protein, at 3,114,479 to 3,115,447 _RS16340 Position (kb) 3113 3114 3115Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3112.888 kb on + strand, within SGL_RS16330at 3112.949 kb on - strand, within SGL_RS16330at 3112.956 kb on + strand, within SGL_RS16330at 3112.985 kb on + strand, within SGL_RS16330at 3113.021 kb on + strand, within SGL_RS16330at 3113.077 kb on + strand, within SGL_RS16330at 3113.102 kb on + strand, within SGL_RS16330at 3113.124 kb on - strand, within SGL_RS16330at 3113.156 kb on + strand, within SGL_RS16330at 3113.318 kb on + strand, within SGL_RS16330at 3113.318 kb on + strand, within SGL_RS16330at 3113.407 kb on + strand, within SGL_RS16330at 3113.415 kb on - strand, within SGL_RS16330at 3113.562 kb on + strand, within SGL_RS16330at 3113.570 kb on - strand, within SGL_RS16330at 3113.603 kb on - strand, within SGL_RS16330at 3113.605 kb on - strand, within SGL_RS16330at 3113.691 kb on - strandat 3113.726 kb on + strandat 3113.729 kb on - strandat 3113.734 kb on - strandat 3113.781 kb on - strandat 3113.783 kb on - strandat 3113.835 kb on - strandat 3113.843 kb on + strandat 3113.875 kb on - strandat 3113.988 kb on + strand, within SGL_RS16335at 3113.998 kb on - strand, within SGL_RS16335at 3114.027 kb on + strand, within SGL_RS16335at 3114.052 kb on + strand, within SGL_RS16335at 3114.065 kb on + strand, within SGL_RS16335at 3114.065 kb on + strand, within SGL_RS16335at 3114.073 kb on - strand, within SGL_RS16335at 3114.073 kb on - strand, within SGL_RS16335at 3114.249 kb on - strandat 3114.483 kb on - strandat 3114.483 kb on - strandat 3114.528 kb on - strandat 3114.533 kb on - strandat 3114.582 kb on - strand, within SGL_RS16340at 3114.671 kb on - strand, within SGL_RS16340at 3114.691 kb on + strand, within SGL_RS16340at 3114.705 kb on - strand, within SGL_RS16340at 3114.707 kb on + strand, within SGL_RS16340at 3114.722 kb on - strand, within SGL_RS16340at 3114.787 kb on + strand, within SGL_RS16340at 3114.854 kb on - strand, within SGL_RS16340at 3114.856 kb on + strand, within SGL_RS16340at 3115.053 kb on - strand, within SGL_RS16340at 3115.158 kb on + strand, within SGL_RS16340at 3115.161 kb on - strand, within SGL_RS16340at 3115.161 kb on - strand, within SGL_RS16340at 3115.238 kb on + strand, within SGL_RS16340at 3115.238 kb on - strand, within SGL_RS16340at 3115.287 kb on + strand, within SGL_RS16340

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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3,112,888 + SGL_RS16330 0.29 +1.0
3,112,949 - SGL_RS16330 0.34 +0.2
3,112,956 + SGL_RS16330 0.34 +0.5
3,112,985 + SGL_RS16330 0.36 -0.0
3,113,021 + SGL_RS16330 0.39 -0.2
3,113,077 + SGL_RS16330 0.44 -0.2
3,113,102 + SGL_RS16330 0.45 -0.2
3,113,124 - SGL_RS16330 0.47 -0.3
3,113,156 + SGL_RS16330 0.50 -0.0
3,113,318 + SGL_RS16330 0.62 +0.7
3,113,318 + SGL_RS16330 0.62 +0.3
3,113,407 + SGL_RS16330 0.69 -0.2
3,113,415 - SGL_RS16330 0.70 +0.1
3,113,562 + SGL_RS16330 0.81 -0.0
3,113,570 - SGL_RS16330 0.82 -0.2
3,113,603 - SGL_RS16330 0.84 -0.0
3,113,605 - SGL_RS16330 0.85 +0.4
3,113,691 - +0.1
3,113,726 + +0.7
3,113,729 - -0.1
3,113,734 - +0.1
3,113,781 - -0.2
3,113,783 - +0.0
3,113,835 - -3.6
3,113,843 + -1.1
3,113,875 - +0.2
3,113,988 + SGL_RS16335 0.28 -3.5
3,113,998 - SGL_RS16335 0.30 -2.2
3,114,027 + SGL_RS16335 0.37 -2.9
3,114,052 + SGL_RS16335 0.43 -2.3
3,114,065 + SGL_RS16335 0.46 -2.5
3,114,065 + SGL_RS16335 0.46 -3.2
3,114,073 - SGL_RS16335 0.48 -4.1
3,114,073 - SGL_RS16335 0.48 -3.4
3,114,249 - -3.0
3,114,483 - +0.1
3,114,483 - +0.6
3,114,528 - +0.1
3,114,533 - +0.6
3,114,582 - SGL_RS16340 0.11 +0.1
3,114,671 - SGL_RS16340 0.20 +0.2
3,114,691 + SGL_RS16340 0.22 -0.3
3,114,705 - SGL_RS16340 0.23 +0.2
3,114,707 + SGL_RS16340 0.24 -0.0
3,114,722 - SGL_RS16340 0.25 -0.3
3,114,787 + SGL_RS16340 0.32 +0.0
3,114,854 - SGL_RS16340 0.39 +0.1
3,114,856 + SGL_RS16340 0.39 +0.9
3,115,053 - SGL_RS16340 0.59 -0.1
3,115,158 + SGL_RS16340 0.70 +0.2
3,115,161 - SGL_RS16340 0.70 -0.0
3,115,161 - SGL_RS16340 0.70 +0.5
3,115,238 + SGL_RS16340 0.78 +0.5
3,115,238 - SGL_RS16340 0.78 -0.3
3,115,287 + SGL_RS16340 0.83 -0.1

Or see this region's nucleotide sequence