Experiment: D-Sorbitol 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15835 and SGL_RS15840 are separated by 168 nucleotides SGL_RS15840 and SGL_RS15845 are separated by 0 nucleotides
SGL_RS15835: SGL_RS15835 - TrmJ/YjtD family RNA methyltransferase, at 3,002,075 to 3,002,797
_RS15835
SGL_RS15840: SGL_RS15840 - class A beta-lactamase, at 3,002,966 to 3,004,453
_RS15840
SGL_RS15845: SGL_RS15845 - polyphosphate kinase 1, at 3,004,454 to 3,006,640
_RS15845
Position (kb)
3002
3003
3004
3005 Strain fitness (log2 ratio)
-8
-7
-6
-5
-4
-3
-2
-1
0
1 at 3002.186 kb on + strand, within SGL_RS15835 at 3002.227 kb on + strand, within SGL_RS15835 at 3002.289 kb on + strand, within SGL_RS15835 at 3002.297 kb on - strand, within SGL_RS15835 at 3002.370 kb on - strand, within SGL_RS15835 at 3002.407 kb on - strand, within SGL_RS15835 at 3002.407 kb on - strand, within SGL_RS15835 at 3002.422 kb on - strand, within SGL_RS15835 at 3002.445 kb on + strand, within SGL_RS15835 at 3002.451 kb on - strand, within SGL_RS15835 at 3002.462 kb on - strand, within SGL_RS15835 at 3002.499 kb on + strand, within SGL_RS15835 at 3002.571 kb on - strand, within SGL_RS15835 at 3002.587 kb on - strand, within SGL_RS15835 at 3002.613 kb on - strand, within SGL_RS15835 at 3002.619 kb on - strand, within SGL_RS15835 at 3002.630 kb on + strand, within SGL_RS15835 at 3002.735 kb on - strand at 3002.830 kb on + strand at 3002.869 kb on - strand at 3002.936 kb on + strand at 3002.942 kb on + strand at 3002.996 kb on - strand at 3003.153 kb on - strand, within SGL_RS15840 at 3003.237 kb on - strand, within SGL_RS15840 at 3003.374 kb on + strand, within SGL_RS15840 at 3003.374 kb on + strand, within SGL_RS15840 at 3003.376 kb on + strand, within SGL_RS15840 at 3003.382 kb on - strand, within SGL_RS15840 at 3003.382 kb on - strand, within SGL_RS15840 at 3003.382 kb on - strand, within SGL_RS15840 at 3003.425 kb on - strand, within SGL_RS15840 at 3003.566 kb on - strand, within SGL_RS15840 at 3003.628 kb on - strand, within SGL_RS15840 at 3003.639 kb on - strand, within SGL_RS15840 at 3003.682 kb on - strand, within SGL_RS15840 at 3004.061 kb on - strand, within SGL_RS15840 at 3004.086 kb on - strand, within SGL_RS15840 at 3004.234 kb on - strand, within SGL_RS15840 at 3004.291 kb on - strand, within SGL_RS15840 at 3004.496 kb on + strand at 3004.561 kb on - strand at 3004.574 kb on - strand at 3004.690 kb on + strand, within SGL_RS15845 at 3005.092 kb on + strand, within SGL_RS15845 at 3005.126 kb on + strand, within SGL_RS15845 at 3005.136 kb on + strand, within SGL_RS15845 at 3005.136 kb on + strand, within SGL_RS15845 at 3005.205 kb on - strand, within SGL_RS15845 at 3005.237 kb on - strand, within SGL_RS15845 at 3005.272 kb on - strand, within SGL_RS15845 at 3005.284 kb on + strand, within SGL_RS15845 at 3005.284 kb on + strand, within SGL_RS15845 at 3005.438 kb on + strand, within SGL_RS15845
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM remove 3,002,186 + SGL_RS15835 0.15 -2.0 3,002,227 + SGL_RS15835 0.21 -2.6 3,002,289 + SGL_RS15835 0.30 -2.4 3,002,297 - SGL_RS15835 0.31 -4.4 3,002,370 - SGL_RS15835 0.41 -2.5 3,002,407 - SGL_RS15835 0.46 -2.3 3,002,407 - SGL_RS15835 0.46 -2.8 3,002,422 - SGL_RS15835 0.48 -2.6 3,002,445 + SGL_RS15835 0.51 -2.9 3,002,451 - SGL_RS15835 0.52 -3.5 3,002,462 - SGL_RS15835 0.54 -1.7 3,002,499 + SGL_RS15835 0.59 -3.4 3,002,571 - SGL_RS15835 0.69 -3.2 3,002,587 - SGL_RS15835 0.71 -2.5 3,002,613 - SGL_RS15835 0.74 -4.8 3,002,619 - SGL_RS15835 0.75 -3.5 3,002,630 + SGL_RS15835 0.77 -3.0 3,002,735 - -1.2 3,002,830 + -3.0 3,002,869 - -4.5 3,002,936 + -6.5 3,002,942 + -5.4 3,002,996 - -6.1 3,003,153 - SGL_RS15840 0.13 -6.5 3,003,237 - SGL_RS15840 0.18 -5.6 3,003,374 + SGL_RS15840 0.27 -7.1 3,003,374 + SGL_RS15840 0.27 -6.0 3,003,376 + SGL_RS15840 0.28 -6.9 3,003,382 - SGL_RS15840 0.28 -7.1 3,003,382 - SGL_RS15840 0.28 -5.5 3,003,382 - SGL_RS15840 0.28 -6.9 3,003,425 - SGL_RS15840 0.31 -7.5 3,003,566 - SGL_RS15840 0.40 -6.4 3,003,628 - SGL_RS15840 0.44 -6.0 3,003,639 - SGL_RS15840 0.45 -6.4 3,003,682 - SGL_RS15840 0.48 -6.3 3,004,061 - SGL_RS15840 0.74 -6.9 3,004,086 - SGL_RS15840 0.75 -7.2 3,004,234 - SGL_RS15840 0.85 -7.9 3,004,291 - SGL_RS15840 0.89 -6.4 3,004,496 + -4.0 3,004,561 - -4.5 3,004,574 - -4.5 3,004,690 + SGL_RS15845 0.11 -6.2 3,005,092 + SGL_RS15845 0.29 -5.9 3,005,126 + SGL_RS15845 0.31 -3.7 3,005,136 + SGL_RS15845 0.31 -4.8 3,005,136 + SGL_RS15845 0.31 -5.9 3,005,205 - SGL_RS15845 0.34 -5.1 3,005,237 - SGL_RS15845 0.36 -5.0 3,005,272 - SGL_RS15845 0.37 -4.6 3,005,284 + SGL_RS15845 0.38 -1.8 3,005,284 + SGL_RS15845 0.38 -5.1 3,005,438 + SGL_RS15845 0.45 -4.4
Or see this region's nucleotide sequence