Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15560

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15555 and SGL_RS15560 are separated by 170 nucleotidesSGL_RS15560 and SGL_RS15565 are separated by 50 nucleotides SGL_RS15555: SGL_RS15555 - ribose-phosphate pyrophosphokinase, at 2,938,630 to 2,939,631 _RS15555 SGL_RS15560: SGL_RS15560 - dethiobiotin synthase, at 2,939,802 to 2,940,515 _RS15560 SGL_RS15565: SGL_RS15565 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 2,940,566 to 2,941,666 _RS15565 Position (kb) 2939 2940 2941Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2939.177 kb on + strand, within SGL_RS15555at 2939.737 kb on + strandat 2940.049 kb on - strand, within SGL_RS15560at 2940.050 kb on - strand, within SGL_RS15560at 2940.141 kb on + strand, within SGL_RS15560at 2940.146 kb on + strand, within SGL_RS15560at 2940.153 kb on + strand, within SGL_RS15560at 2940.368 kb on - strand, within SGL_RS15560at 2940.428 kb on + strand, within SGL_RS15560at 2940.428 kb on + strand, within SGL_RS15560at 2940.627 kb on - strandat 2940.802 kb on + strand, within SGL_RS15565at 2940.845 kb on + strand, within SGL_RS15565at 2940.853 kb on + strand, within SGL_RS15565at 2941.006 kb on + strand, within SGL_RS15565at 2941.166 kb on + strand, within SGL_RS15565at 2941.280 kb on - strand, within SGL_RS15565at 2941.296 kb on + strand, within SGL_RS15565at 2941.304 kb on - strand, within SGL_RS15565

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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2,939,177 + SGL_RS15555 0.55 -1.4
2,939,737 + -0.3
2,940,049 - SGL_RS15560 0.35 -4.2
2,940,050 - SGL_RS15560 0.35 -2.2
2,940,141 + SGL_RS15560 0.47 -3.8
2,940,146 + SGL_RS15560 0.48 -3.0
2,940,153 + SGL_RS15560 0.49 -3.2
2,940,368 - SGL_RS15560 0.79 -2.8
2,940,428 + SGL_RS15560 0.88 -2.5
2,940,428 + SGL_RS15560 0.88 -3.5
2,940,627 - -1.9
2,940,802 + SGL_RS15565 0.21 -2.3
2,940,845 + SGL_RS15565 0.25 -3.2
2,940,853 + SGL_RS15565 0.26 -2.0
2,941,006 + SGL_RS15565 0.40 -2.0
2,941,166 + SGL_RS15565 0.54 -2.7
2,941,280 - SGL_RS15565 0.65 -2.6
2,941,296 + SGL_RS15565 0.66 -1.9
2,941,304 - SGL_RS15565 0.67 -2.5

Or see this region's nucleotide sequence