Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15335

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15325 and SGL_RS15330 are separated by 245 nucleotidesSGL_RS15330 and SGL_RS15335 are separated by 2 nucleotidesSGL_RS15335 and SGL_RS15340 are separated by 171 nucleotides SGL_RS15325: SGL_RS15325 - N-acetyl-gamma-glutamyl-phosphate reductase, at 2,889,265 to 2,890,320 _RS15325 SGL_RS15330: SGL_RS15330 - imidazole glycerol phosphate synthase subunit HisH, at 2,890,566 to 2,891,198 _RS15330 SGL_RS15335: SGL_RS15335 - threonine--tRNA ligase, at 2,891,201 to 2,893,012 _RS15335 SGL_RS15340: SGL_RS15340 - Hsp70 family protein, at 2,893,184 to 2,894,779 _RS15340 Position (kb) 2891 2892 2893 2894Strain fitness (log2 ratio) -3 -2 -1 0 1at 2890.469 kb on + strandat 2890.542 kb on + strandat 2890.550 kb on - strandat 2890.689 kb on - strand, within SGL_RS15330at 2893.072 kb on + strandat 2893.100 kb on - strandat 2893.138 kb on + strandat 2893.143 kb on + strandat 2893.151 kb on - strandat 2893.194 kb on - strandat 2893.277 kb on - strandat 2893.289 kb on - strandat 2893.481 kb on - strand, within SGL_RS15340at 2893.499 kb on + strand, within SGL_RS15340at 2893.630 kb on + strand, within SGL_RS15340at 2893.642 kb on + strand, within SGL_RS15340at 2893.684 kb on + strand, within SGL_RS15340at 2893.684 kb on + strand, within SGL_RS15340at 2893.687 kb on - strand, within SGL_RS15340at 2893.692 kb on - strand, within SGL_RS15340at 2893.692 kb on - strand, within SGL_RS15340at 2893.757 kb on + strand, within SGL_RS15340at 2893.775 kb on + strand, within SGL_RS15340at 2893.941 kb on + strand, within SGL_RS15340at 2893.942 kb on - strand, within SGL_RS15340at 2893.942 kb on - strand, within SGL_RS15340

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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2,890,469 + -0.0
2,890,542 + -2.1
2,890,550 - -2.5
2,890,689 - SGL_RS15330 0.19 -3.3
2,893,072 + +0.1
2,893,100 - +0.0
2,893,138 + +0.4
2,893,143 + -0.3
2,893,151 - -0.2
2,893,194 - +0.2
2,893,277 - +0.3
2,893,289 - -0.4
2,893,481 - SGL_RS15340 0.19 -0.2
2,893,499 + SGL_RS15340 0.20 -0.1
2,893,630 + SGL_RS15340 0.28 -0.0
2,893,642 + SGL_RS15340 0.29 -0.0
2,893,684 + SGL_RS15340 0.31 -0.3
2,893,684 + SGL_RS15340 0.31 -0.2
2,893,687 - SGL_RS15340 0.32 -0.6
2,893,692 - SGL_RS15340 0.32 -0.8
2,893,692 - SGL_RS15340 0.32 -0.0
2,893,757 + SGL_RS15340 0.36 -0.4
2,893,775 + SGL_RS15340 0.37 -0.4
2,893,941 + SGL_RS15340 0.47 -1.4
2,893,942 - SGL_RS15340 0.47 -0.6
2,893,942 - SGL_RS15340 0.47 -0.0

Or see this region's nucleotide sequence