Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15245

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15240 and SGL_RS15245 overlap by 4 nucleotidesSGL_RS15245 and SGL_RS15250 are separated by 255 nucleotides SGL_RS15240: SGL_RS15240 - Hpt domain-containing protein, at 2,869,791 to 2,870,699 _RS15240 SGL_RS15245: SGL_RS15245 - iron-sulfur cluster biosynthesis transcriptional regulator SufR, at 2,870,696 to 2,871,418 _RS15245 SGL_RS15250: SGL_RS15250 - Fe-S cluster assembly protein SufB, at 2,871,674 to 2,873,116 _RS15250 Position (kb) 2870 2871 2872Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 2869.761 kb on - strandat 2869.761 kb on - strandat 2869.857 kb on - strandat 2869.874 kb on + strandat 2869.874 kb on + strandat 2869.874 kb on + strandat 2869.881 kb on + strandat 2870.254 kb on + strand, within SGL_RS15240at 2870.297 kb on + strand, within SGL_RS15240at 2870.426 kb on - strand, within SGL_RS15240at 2870.550 kb on - strand, within SGL_RS15240at 2871.170 kb on - strand, within SGL_RS15245at 2871.254 kb on + strand, within SGL_RS15245at 2871.328 kb on + strand, within SGL_RS15245at 2871.333 kb on + strand, within SGL_RS15245at 2871.468 kb on + strandat 2871.474 kb on + strandat 2871.476 kb on - strandat 2871.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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2,869,761 - -1.1
2,869,761 - -1.0
2,869,857 - -0.4
2,869,874 + -0.2
2,869,874 + -0.4
2,869,874 + -0.4
2,869,881 + -1.0
2,870,254 + SGL_RS15240 0.51 +0.3
2,870,297 + SGL_RS15240 0.56 -0.5
2,870,426 - SGL_RS15240 0.70 -0.4
2,870,550 - SGL_RS15240 0.83 -0.4
2,871,170 - SGL_RS15245 0.66 -8.2
2,871,254 + SGL_RS15245 0.77 -7.1
2,871,328 + SGL_RS15245 0.87 -6.3
2,871,333 + SGL_RS15245 0.88 -6.7
2,871,468 + -0.3
2,871,474 + -0.3
2,871,476 - +0.0
2,871,476 - -0.1

Or see this region's nucleotide sequence