Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14500

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14495 and SGL_RS14500 are separated by 558 nucleotidesSGL_RS14500 and SGL_RS14505 are separated by 77 nucleotides SGL_RS14495: SGL_RS14495 - septal ring lytic transglycosylase RlpA family protein, at 2,706,733 to 2,707,698 _RS14495 SGL_RS14500: SGL_RS14500 - urea ABC transporter ATP-binding subunit UrtE, at 2,708,257 to 2,709,006 _RS14500 SGL_RS14505: SGL_RS14505 - glutamate-5-semialdehyde dehydrogenase, at 2,709,084 to 2,710,385 _RS14505 Position (kb) 2708 2709 2710Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2707.298 kb on + strand, within SGL_RS14495at 2707.328 kb on + strand, within SGL_RS14495at 2707.350 kb on + strand, within SGL_RS14495at 2707.357 kb on + strand, within SGL_RS14495at 2707.447 kb on - strand, within SGL_RS14495at 2707.575 kb on - strand, within SGL_RS14495at 2707.668 kb on + strandat 2707.676 kb on - strandat 2707.678 kb on + strandat 2707.686 kb on - strandat 2707.733 kb on - strandat 2708.055 kb on + strandat 2708.231 kb on - strandat 2708.291 kb on - strandat 2708.513 kb on + strand, within SGL_RS14500at 2708.674 kb on + strand, within SGL_RS14500at 2708.740 kb on - strand, within SGL_RS14500at 2708.823 kb on - strand, within SGL_RS14500at 2708.924 kb on + strand, within SGL_RS14500at 2708.982 kb on - strandat 2709.119 kb on + strandat 2709.141 kb on - strandat 2709.164 kb on + strandat 2709.172 kb on - strandat 2709.388 kb on - strand, within SGL_RS14505at 2709.461 kb on - strand, within SGL_RS14505at 2709.540 kb on + strand, within SGL_RS14505at 2709.554 kb on - strand, within SGL_RS14505at 2709.649 kb on + strand, within SGL_RS14505at 2709.671 kb on - strand, within SGL_RS14505at 2709.745 kb on - strand, within SGL_RS14505

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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2,707,298 + SGL_RS14495 0.58 +1.3
2,707,328 + SGL_RS14495 0.62 +0.7
2,707,350 + SGL_RS14495 0.64 +0.9
2,707,357 + SGL_RS14495 0.65 +0.6
2,707,447 - SGL_RS14495 0.74 -0.4
2,707,575 - SGL_RS14495 0.87 +0.6
2,707,668 + +0.4
2,707,676 - +0.7
2,707,678 + +0.7
2,707,686 - +0.7
2,707,733 - +0.1
2,708,055 + +0.3
2,708,231 - +0.2
2,708,291 - -0.5
2,708,513 + SGL_RS14500 0.34 -0.7
2,708,674 + SGL_RS14500 0.56 -1.4
2,708,740 - SGL_RS14500 0.64 -0.1
2,708,823 - SGL_RS14500 0.75 -1.1
2,708,924 + SGL_RS14500 0.89 -1.2
2,708,982 - -0.8
2,709,119 + -3.4
2,709,141 - -4.6
2,709,164 + +0.6
2,709,172 - +0.0
2,709,388 - SGL_RS14505 0.23 -0.3
2,709,461 - SGL_RS14505 0.29 +0.1
2,709,540 + SGL_RS14505 0.35 +0.0
2,709,554 - SGL_RS14505 0.36 -0.3
2,709,649 + SGL_RS14505 0.43 +0.7
2,709,671 - SGL_RS14505 0.45 +0.4
2,709,745 - SGL_RS14505 0.51 +1.2

Or see this region's nucleotide sequence