Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14100

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14090 and SGL_RS19040 are separated by 126 nucleotidesSGL_RS19040 and SGL_RS14100 overlap by 14 nucleotidesSGL_RS14100 and SGL_RS14105 are separated by 38 nucleotides SGL_RS14090: SGL_RS14090 - murein biosynthesis integral membrane protein MurJ, at 2,620,798 to 2,622,399 _RS14090 SGL_RS19040: SGL_RS19040 - hypothetical protein, at 2,622,526 to 2,622,981 _RS19040 SGL_RS14100: SGL_RS14100 - gamma-glutamylcyclotransferase, at 2,622,968 to 2,623,402 _RS14100 SGL_RS14105: SGL_RS14105 - 2-succinylbenzoate--CoA ligase, at 2,623,441 to 2,624,907 _RS14105 Position (kb) 2622 2623 2624Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2622.392 kb on + strandat 2622.544 kb on + strandat 2622.628 kb on - strand, within SGL_RS19040at 2622.631 kb on - strand, within SGL_RS19040at 2622.748 kb on + strand, within SGL_RS19040at 2622.840 kb on - strand, within SGL_RS19040at 2622.966 kb on - strandat 2623.080 kb on + strand, within SGL_RS14100at 2623.085 kb on + strand, within SGL_RS14100at 2623.236 kb on - strand, within SGL_RS14100at 2623.247 kb on + strand, within SGL_RS14100at 2623.370 kb on - strandat 2623.404 kb on - strandat 2624.028 kb on - strand, within SGL_RS14105at 2624.052 kb on - strand, within SGL_RS14105at 2624.055 kb on + strand, within SGL_RS14105at 2624.130 kb on - strand, within SGL_RS14105at 2624.147 kb on + strand, within SGL_RS14105at 2624.147 kb on + strand, within SGL_RS14105at 2624.256 kb on - strand, within SGL_RS14105at 2624.335 kb on - strand, within SGL_RS14105at 2624.335 kb on - strand, within SGL_RS14105

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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2,622,392 + -1.1
2,622,544 + +0.3
2,622,628 - SGL_RS19040 0.22 -4.8
2,622,631 - SGL_RS19040 0.23 -6.7
2,622,748 + SGL_RS19040 0.49 -3.9
2,622,840 - SGL_RS19040 0.69 -7.2
2,622,966 - -5.1
2,623,080 + SGL_RS14100 0.26 -6.8
2,623,085 + SGL_RS14100 0.27 -7.1
2,623,236 - SGL_RS14100 0.62 -5.2
2,623,247 + SGL_RS14100 0.64 -5.2
2,623,370 - -5.7
2,623,404 - +0.1
2,624,028 - SGL_RS14105 0.40 -3.3
2,624,052 - SGL_RS14105 0.42 -1.1
2,624,055 + SGL_RS14105 0.42 -3.0
2,624,130 - SGL_RS14105 0.47 -2.0
2,624,147 + SGL_RS14105 0.48 -3.0
2,624,147 + SGL_RS14105 0.48 -1.9
2,624,256 - SGL_RS14105 0.56 -3.4
2,624,335 - SGL_RS14105 0.61 -1.8
2,624,335 - SGL_RS14105 0.61 -3.3

Or see this region's nucleotide sequence