Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13945

Experiment: D-Sorbitol 500 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS13940 and SGL_RS13945 are separated by 233 nucleotidesSGL_RS13945 and SGL_RS13950 are separated by 217 nucleotides SGL_RS13940: SGL_RS13940 - molecular chaperone DnaK, at 2,586,572 to 2,588,650 _RS13940 SGL_RS13945: SGL_RS13945 - nucleotide exchange factor GrpE, at 2,588,884 to 2,589,633 _RS13945 SGL_RS13950: SGL_RS13950 - GspE/PulE family protein, at 2,589,851 to 2,591,869 _RS13950 Position (kb) 2588 2589 2590Strain fitness (log2 ratio) -1 0 1 2at 2587.985 kb on + strand, within SGL_RS13940at 2588.182 kb on + strand, within SGL_RS13940at 2588.192 kb on + strand, within SGL_RS13940at 2588.333 kb on - strand, within SGL_RS13940at 2588.350 kb on - strand, within SGL_RS13940at 2588.358 kb on + strand, within SGL_RS13940at 2588.363 kb on + strand, within SGL_RS13940at 2588.379 kb on - strand, within SGL_RS13940at 2588.381 kb on + strand, within SGL_RS13940at 2588.381 kb on + strand, within SGL_RS13940at 2588.389 kb on - strand, within SGL_RS13940at 2588.389 kb on - strand, within SGL_RS13940at 2588.389 kb on - strand, within SGL_RS13940at 2588.450 kb on + strandat 2588.792 kb on + strandat 2588.902 kb on - strandat 2589.740 kb on + strandat 2589.752 kb on - strandat 2589.762 kb on - strandat 2589.764 kb on - strandat 2589.769 kb on + strandat 2589.801 kb on + strandat 2589.835 kb on - strandat 2589.875 kb on - strandat 2589.939 kb on + strandat 2590.249 kb on - strand, within SGL_RS13950at 2590.277 kb on + strand, within SGL_RS13950at 2590.285 kb on - strand, within SGL_RS13950at 2590.372 kb on + strand, within SGL_RS13950at 2590.372 kb on + strand, within SGL_RS13950at 2590.372 kb on + strand, within SGL_RS13950at 2590.372 kb on + strand, within SGL_RS13950at 2590.380 kb on - strand, within SGL_RS13950at 2590.408 kb on + strand, within SGL_RS13950at 2590.492 kb on + strand, within SGL_RS13950at 2590.514 kb on + strand, within SGL_RS13950at 2590.520 kb on + strand, within SGL_RS13950at 2590.555 kb on - strand, within SGL_RS13950

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
remove
2,587,985 + SGL_RS13940 0.68 +1.5
2,588,182 + SGL_RS13940 0.77 +1.7
2,588,192 + SGL_RS13940 0.78 +1.7
2,588,333 - SGL_RS13940 0.85 +1.5
2,588,350 - SGL_RS13940 0.86 +1.3
2,588,358 + SGL_RS13940 0.86 +2.4
2,588,363 + SGL_RS13940 0.86 +1.6
2,588,379 - SGL_RS13940 0.87 +1.2
2,588,381 + SGL_RS13940 0.87 +1.6
2,588,381 + SGL_RS13940 0.87 +2.2
2,588,389 - SGL_RS13940 0.87 +1.7
2,588,389 - SGL_RS13940 0.87 +1.5
2,588,389 - SGL_RS13940 0.87 +1.8
2,588,450 + +1.7
2,588,792 + +0.3
2,588,902 - -0.0
2,589,740 + +0.0
2,589,752 - -0.2
2,589,762 - -0.0
2,589,764 - -0.2
2,589,769 + +0.5
2,589,801 + +0.1
2,589,835 - +0.1
2,589,875 - +0.2
2,589,939 + -0.0
2,590,249 - SGL_RS13950 0.20 -0.1
2,590,277 + SGL_RS13950 0.21 +0.4
2,590,285 - SGL_RS13950 0.21 -0.2
2,590,372 + SGL_RS13950 0.26 -0.1
2,590,372 + SGL_RS13950 0.26 -0.3
2,590,372 + SGL_RS13950 0.26 -0.4
2,590,372 + SGL_RS13950 0.26 -0.5
2,590,380 - SGL_RS13950 0.26 +0.7
2,590,408 + SGL_RS13950 0.28 -0.3
2,590,492 + SGL_RS13950 0.32 -0.0
2,590,514 + SGL_RS13950 0.33 +0.0
2,590,520 + SGL_RS13950 0.33 -0.2
2,590,555 - SGL_RS13950 0.35 -0.0

Or see this region's nucleotide sequence