Experiment: D-Sorbitol 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13940 and SGL_RS13945 are separated by 233 nucleotides SGL_RS13945 and SGL_RS13950 are separated by 217 nucleotides
SGL_RS13940: SGL_RS13940 - molecular chaperone DnaK, at 2,586,572 to 2,588,650
_RS13940
SGL_RS13945: SGL_RS13945 - nucleotide exchange factor GrpE, at 2,588,884 to 2,589,633
_RS13945
SGL_RS13950: SGL_RS13950 - GspE/PulE family protein, at 2,589,851 to 2,591,869
_RS13950
Position (kb)
2588
2589
2590 Strain fitness (log2 ratio)
-1
0
1
2 at 2587.985 kb on + strand, within SGL_RS13940 at 2588.182 kb on + strand, within SGL_RS13940 at 2588.192 kb on + strand, within SGL_RS13940 at 2588.333 kb on - strand, within SGL_RS13940 at 2588.350 kb on - strand, within SGL_RS13940 at 2588.358 kb on + strand, within SGL_RS13940 at 2588.363 kb on + strand, within SGL_RS13940 at 2588.379 kb on - strand, within SGL_RS13940 at 2588.381 kb on + strand, within SGL_RS13940 at 2588.381 kb on + strand, within SGL_RS13940 at 2588.389 kb on - strand, within SGL_RS13940 at 2588.389 kb on - strand, within SGL_RS13940 at 2588.389 kb on - strand, within SGL_RS13940 at 2588.450 kb on + strand at 2588.792 kb on + strand at 2588.902 kb on - strand at 2589.740 kb on + strand at 2589.752 kb on - strand at 2589.762 kb on - strand at 2589.764 kb on - strand at 2589.769 kb on + strand at 2589.801 kb on + strand at 2589.835 kb on - strand at 2589.875 kb on - strand at 2589.939 kb on + strand at 2590.249 kb on - strand, within SGL_RS13950 at 2590.277 kb on + strand, within SGL_RS13950 at 2590.285 kb on - strand, within SGL_RS13950 at 2590.372 kb on + strand, within SGL_RS13950 at 2590.372 kb on + strand, within SGL_RS13950 at 2590.372 kb on + strand, within SGL_RS13950 at 2590.372 kb on + strand, within SGL_RS13950 at 2590.380 kb on - strand, within SGL_RS13950 at 2590.408 kb on + strand, within SGL_RS13950 at 2590.492 kb on + strand, within SGL_RS13950 at 2590.514 kb on + strand, within SGL_RS13950 at 2590.520 kb on + strand, within SGL_RS13950 at 2590.555 kb on - strand, within SGL_RS13950
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM remove 2,587,985 + SGL_RS13940 0.68 +1.5 2,588,182 + SGL_RS13940 0.77 +1.7 2,588,192 + SGL_RS13940 0.78 +1.7 2,588,333 - SGL_RS13940 0.85 +1.5 2,588,350 - SGL_RS13940 0.86 +1.3 2,588,358 + SGL_RS13940 0.86 +2.4 2,588,363 + SGL_RS13940 0.86 +1.6 2,588,379 - SGL_RS13940 0.87 +1.2 2,588,381 + SGL_RS13940 0.87 +1.6 2,588,381 + SGL_RS13940 0.87 +2.2 2,588,389 - SGL_RS13940 0.87 +1.7 2,588,389 - SGL_RS13940 0.87 +1.5 2,588,389 - SGL_RS13940 0.87 +1.8 2,588,450 + +1.7 2,588,792 + +0.3 2,588,902 - -0.0 2,589,740 + +0.0 2,589,752 - -0.2 2,589,762 - -0.0 2,589,764 - -0.2 2,589,769 + +0.5 2,589,801 + +0.1 2,589,835 - +0.1 2,589,875 - +0.2 2,589,939 + -0.0 2,590,249 - SGL_RS13950 0.20 -0.1 2,590,277 + SGL_RS13950 0.21 +0.4 2,590,285 - SGL_RS13950 0.21 -0.2 2,590,372 + SGL_RS13950 0.26 -0.1 2,590,372 + SGL_RS13950 0.26 -0.3 2,590,372 + SGL_RS13950 0.26 -0.4 2,590,372 + SGL_RS13950 0.26 -0.5 2,590,380 - SGL_RS13950 0.26 +0.7 2,590,408 + SGL_RS13950 0.28 -0.3 2,590,492 + SGL_RS13950 0.32 -0.0 2,590,514 + SGL_RS13950 0.33 +0.0 2,590,520 + SGL_RS13950 0.33 -0.2 2,590,555 - SGL_RS13950 0.35 -0.0
Or see this region's nucleotide sequence