Experiment: D-Sorbitol 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13675 and SGL_RS13680 are separated by 192 nucleotides SGL_RS13680 and SGL_RS13685 are separated by 162 nucleotides
SGL_RS13675: SGL_RS13675 - 2OG-Fe(II) oxygenase, at 2,537,896 to 2,538,807
_RS13675
SGL_RS13680: SGL_RS13680 - chaperonin GroEL, at 2,539,000 to 2,540,658
_RS13680
SGL_RS13685: SGL_RS13685 - ABC transporter ATP-binding protein, at 2,540,821 to 2,541,885
_RS13685
Position (kb)
2538
2539
2540
2541 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 2538.608 kb on + strand, within SGL_RS13675 at 2538.989 kb on + strand at 2539.003 kb on + strand at 2539.026 kb on - strand at 2539.535 kb on - strand, within SGL_RS13680 at 2539.727 kb on - strand, within SGL_RS13680 at 2539.735 kb on + strand, within SGL_RS13680 at 2539.746 kb on + strand, within SGL_RS13680 at 2539.754 kb on - strand, within SGL_RS13680 at 2539.754 kb on - strand, within SGL_RS13680 at 2539.754 kb on - strand, within SGL_RS13680 at 2539.771 kb on + strand, within SGL_RS13680 at 2539.805 kb on + strand, within SGL_RS13680 at 2539.857 kb on - strand, within SGL_RS13680 at 2540.074 kb on - strand, within SGL_RS13680 at 2540.100 kb on + strand, within SGL_RS13680 at 2540.212 kb on - strand, within SGL_RS13680 at 2540.252 kb on + strand, within SGL_RS13680 at 2540.252 kb on + strand, within SGL_RS13680 at 2540.476 kb on - strand, within SGL_RS13680 at 2540.559 kb on + strand at 2540.566 kb on + strand at 2540.571 kb on + strand at 2540.787 kb on + strand at 2540.796 kb on - strand at 2540.820 kb on - strand at 2540.832 kb on + strand at 2540.842 kb on - strand at 2540.958 kb on + strand, within SGL_RS13685 at 2540.966 kb on - strand, within SGL_RS13685 at 2540.988 kb on + strand, within SGL_RS13685 at 2541.181 kb on + strand, within SGL_RS13685 at 2541.225 kb on + strand, within SGL_RS13685 at 2541.321 kb on - strand, within SGL_RS13685 at 2541.386 kb on - strand, within SGL_RS13685 at 2541.510 kb on + strand, within SGL_RS13685 at 2541.521 kb on - strand, within SGL_RS13685 at 2541.541 kb on + strand, within SGL_RS13685 at 2541.641 kb on - strand, within SGL_RS13685
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM remove 2,538,608 + SGL_RS13675 0.78 -0.2 2,538,989 + -0.1 2,539,003 + -6.5 2,539,026 - -4.4 2,539,535 - SGL_RS13680 0.32 -5.2 2,539,727 - SGL_RS13680 0.44 -5.1 2,539,735 + SGL_RS13680 0.44 -2.0 2,539,746 + SGL_RS13680 0.45 -5.5 2,539,754 - SGL_RS13680 0.45 -4.9 2,539,754 - SGL_RS13680 0.45 -5.1 2,539,754 - SGL_RS13680 0.45 -5.9 2,539,771 + SGL_RS13680 0.46 -4.5 2,539,805 + SGL_RS13680 0.49 -4.1 2,539,857 - SGL_RS13680 0.52 -7.1 2,540,074 - SGL_RS13680 0.65 -4.9 2,540,100 + SGL_RS13680 0.66 -1.0 2,540,212 - SGL_RS13680 0.73 -6.1 2,540,252 + SGL_RS13680 0.75 -6.2 2,540,252 + SGL_RS13680 0.75 -4.3 2,540,476 - SGL_RS13680 0.89 -6.8 2,540,559 + -6.3 2,540,566 + -4.7 2,540,571 + -2.0 2,540,787 + -0.2 2,540,796 - -0.1 2,540,820 - -0.2 2,540,832 + -6.2 2,540,842 - +0.0 2,540,958 + SGL_RS13685 0.13 -6.7 2,540,966 - SGL_RS13685 0.14 -6.3 2,540,988 + SGL_RS13685 0.16 -4.3 2,541,181 + SGL_RS13685 0.34 -3.3 2,541,225 + SGL_RS13685 0.38 -5.4 2,541,321 - SGL_RS13685 0.47 -4.8 2,541,386 - SGL_RS13685 0.53 -3.4 2,541,510 + SGL_RS13685 0.65 -2.0 2,541,521 - SGL_RS13685 0.66 -5.3 2,541,541 + SGL_RS13685 0.68 -5.2 2,541,641 - SGL_RS13685 0.77 -5.6
Or see this region's nucleotide sequence