Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13680

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13675 and SGL_RS13680 are separated by 192 nucleotidesSGL_RS13680 and SGL_RS13685 are separated by 162 nucleotides SGL_RS13675: SGL_RS13675 - 2OG-Fe(II) oxygenase, at 2,537,896 to 2,538,807 _RS13675 SGL_RS13680: SGL_RS13680 - chaperonin GroEL, at 2,539,000 to 2,540,658 _RS13680 SGL_RS13685: SGL_RS13685 - ABC transporter ATP-binding protein, at 2,540,821 to 2,541,885 _RS13685 Position (kb) 2538 2539 2540 2541Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2538.608 kb on + strand, within SGL_RS13675at 2538.989 kb on + strandat 2539.003 kb on + strandat 2539.026 kb on - strandat 2539.535 kb on - strand, within SGL_RS13680at 2539.727 kb on - strand, within SGL_RS13680at 2539.735 kb on + strand, within SGL_RS13680at 2539.746 kb on + strand, within SGL_RS13680at 2539.754 kb on - strand, within SGL_RS13680at 2539.754 kb on - strand, within SGL_RS13680at 2539.754 kb on - strand, within SGL_RS13680at 2539.771 kb on + strand, within SGL_RS13680at 2539.805 kb on + strand, within SGL_RS13680at 2539.857 kb on - strand, within SGL_RS13680at 2540.074 kb on - strand, within SGL_RS13680at 2540.100 kb on + strand, within SGL_RS13680at 2540.212 kb on - strand, within SGL_RS13680at 2540.252 kb on + strand, within SGL_RS13680at 2540.252 kb on + strand, within SGL_RS13680at 2540.476 kb on - strand, within SGL_RS13680at 2540.559 kb on + strandat 2540.566 kb on + strandat 2540.571 kb on + strandat 2540.787 kb on + strandat 2540.796 kb on - strandat 2540.820 kb on - strandat 2540.832 kb on + strandat 2540.842 kb on - strandat 2540.958 kb on + strand, within SGL_RS13685at 2540.966 kb on - strand, within SGL_RS13685at 2540.988 kb on + strand, within SGL_RS13685at 2541.181 kb on + strand, within SGL_RS13685at 2541.225 kb on + strand, within SGL_RS13685at 2541.321 kb on - strand, within SGL_RS13685at 2541.386 kb on - strand, within SGL_RS13685at 2541.510 kb on + strand, within SGL_RS13685at 2541.521 kb on - strand, within SGL_RS13685at 2541.541 kb on + strand, within SGL_RS13685at 2541.641 kb on - strand, within SGL_RS13685

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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2,538,608 + SGL_RS13675 0.78 -0.2
2,538,989 + -0.1
2,539,003 + -6.5
2,539,026 - -4.4
2,539,535 - SGL_RS13680 0.32 -5.2
2,539,727 - SGL_RS13680 0.44 -5.1
2,539,735 + SGL_RS13680 0.44 -2.0
2,539,746 + SGL_RS13680 0.45 -5.5
2,539,754 - SGL_RS13680 0.45 -4.9
2,539,754 - SGL_RS13680 0.45 -5.1
2,539,754 - SGL_RS13680 0.45 -5.9
2,539,771 + SGL_RS13680 0.46 -4.5
2,539,805 + SGL_RS13680 0.49 -4.1
2,539,857 - SGL_RS13680 0.52 -7.1
2,540,074 - SGL_RS13680 0.65 -4.9
2,540,100 + SGL_RS13680 0.66 -1.0
2,540,212 - SGL_RS13680 0.73 -6.1
2,540,252 + SGL_RS13680 0.75 -6.2
2,540,252 + SGL_RS13680 0.75 -4.3
2,540,476 - SGL_RS13680 0.89 -6.8
2,540,559 + -6.3
2,540,566 + -4.7
2,540,571 + -2.0
2,540,787 + -0.2
2,540,796 - -0.1
2,540,820 - -0.2
2,540,832 + -6.2
2,540,842 - +0.0
2,540,958 + SGL_RS13685 0.13 -6.7
2,540,966 - SGL_RS13685 0.14 -6.3
2,540,988 + SGL_RS13685 0.16 -4.3
2,541,181 + SGL_RS13685 0.34 -3.3
2,541,225 + SGL_RS13685 0.38 -5.4
2,541,321 - SGL_RS13685 0.47 -4.8
2,541,386 - SGL_RS13685 0.53 -3.4
2,541,510 + SGL_RS13685 0.65 -2.0
2,541,521 - SGL_RS13685 0.66 -5.3
2,541,541 + SGL_RS13685 0.68 -5.2
2,541,641 - SGL_RS13685 0.77 -5.6

Or see this region's nucleotide sequence