Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12970

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12965 and SGL_RS12970 are separated by 622 nucleotidesSGL_RS12970 and SGL_RS12975 are separated by 27 nucleotides SGL_RS12965: SGL_RS12965 - SDR family NAD(P)-dependent oxidoreductase, at 2,383,949 to 2,384,728 _RS12965 SGL_RS12970: SGL_RS12970 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 2,385,351 to 2,385,911 _RS12970 SGL_RS12975: SGL_RS12975 - glycosyltransferase family 1 protein, at 2,385,939 to 2,387,168 _RS12975 Position (kb) 2385 2386Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 2384.534 kb on + strand, within SGL_RS12965at 2384.619 kb on - strand, within SGL_RS12965at 2384.641 kb on + strand, within SGL_RS12965at 2384.654 kb on - strandat 2384.686 kb on + strandat 2384.861 kb on - strandat 2384.900 kb on + strandat 2384.910 kb on + strandat 2384.917 kb on + strandat 2385.059 kb on + strandat 2385.099 kb on - strandat 2385.393 kb on + strandat 2385.566 kb on - strand, within SGL_RS12970at 2385.607 kb on - strand, within SGL_RS12970at 2385.716 kb on + strand, within SGL_RS12970at 2385.724 kb on - strand, within SGL_RS12970at 2385.729 kb on - strand, within SGL_RS12970at 2385.799 kb on + strand, within SGL_RS12970at 2385.821 kb on - strand, within SGL_RS12970at 2385.839 kb on - strand, within SGL_RS12970at 2385.913 kb on + strandat 2385.975 kb on + strandat 2385.975 kb on + strandat 2385.975 kb on + strandat 2385.977 kb on + strandat 2385.983 kb on - strandat 2385.983 kb on - strandat 2385.992 kb on + strandat 2386.024 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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2,384,534 + SGL_RS12965 0.75 -0.5
2,384,619 - SGL_RS12965 0.86 -1.0
2,384,641 + SGL_RS12965 0.89 -1.0
2,384,654 - +0.1
2,384,686 + -0.9
2,384,861 - -0.1
2,384,900 + +0.0
2,384,910 + -0.1
2,384,917 + -0.1
2,385,059 + -0.7
2,385,099 - +1.0
2,385,393 + -3.0
2,385,566 - SGL_RS12970 0.38 -7.1
2,385,607 - SGL_RS12970 0.46 -4.2
2,385,716 + SGL_RS12970 0.65 -7.7
2,385,724 - SGL_RS12970 0.66 -3.0
2,385,729 - SGL_RS12970 0.67 -8.2
2,385,799 + SGL_RS12970 0.80 -4.2
2,385,821 - SGL_RS12970 0.84 -4.8
2,385,839 - SGL_RS12970 0.87 -7.6
2,385,913 + +0.0
2,385,975 + +0.6
2,385,975 + +0.4
2,385,975 + +1.0
2,385,977 + +0.9
2,385,983 - +1.6
2,385,983 - +1.3
2,385,992 + +0.2
2,386,024 + -3.0

Or see this region's nucleotide sequence