Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12540

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12535 and SGL_RS12540 are separated by 40 nucleotidesSGL_RS12540 and SGL_RS12545 are separated by 460 nucleotides SGL_RS12535: SGL_RS12535 - radical SAM protein, at 2,267,490 to 2,269,085 _RS12535 SGL_RS12540: SGL_RS12540 - RNA polymerase sigma factor, RpoD/SigA family, at 2,269,126 to 2,270,163 _RS12540 SGL_RS12545: SGL_RS12545 - GTPase Era, at 2,270,624 to 2,271,571 _RS12545 Position (kb) 2269 2270 2271Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 2268.172 kb on + strand, within SGL_RS12535at 2268.277 kb on + strand, within SGL_RS12535at 2268.299 kb on + strand, within SGL_RS12535at 2268.448 kb on - strand, within SGL_RS12535at 2268.450 kb on + strand, within SGL_RS12535at 2268.458 kb on - strand, within SGL_RS12535at 2268.458 kb on - strand, within SGL_RS12535at 2268.619 kb on + strand, within SGL_RS12535at 2268.852 kb on - strand, within SGL_RS12535at 2268.917 kb on + strand, within SGL_RS12535at 2268.998 kb on + strandat 2269.016 kb on - strandat 2269.016 kb on - strandat 2269.445 kb on - strand, within SGL_RS12540at 2269.513 kb on - strand, within SGL_RS12540at 2269.616 kb on + strand, within SGL_RS12540at 2269.621 kb on + strand, within SGL_RS12540at 2269.750 kb on - strand, within SGL_RS12540at 2269.859 kb on - strand, within SGL_RS12540at 2270.051 kb on - strand, within SGL_RS12540at 2270.087 kb on + strandat 2270.197 kb on - strandat 2270.204 kb on + strandat 2270.204 kb on + strandat 2270.214 kb on + strandat 2270.317 kb on + strandat 2270.319 kb on - strandat 2270.463 kb on + strandat 2270.554 kb on - strandat 2270.710 kb on - strandat 2271.062 kb on - strand, within SGL_RS12545at 2271.118 kb on - strand, within SGL_RS12545at 2271.157 kb on - strand, within SGL_RS12545

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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2,268,172 + SGL_RS12535 0.43 +0.7
2,268,277 + SGL_RS12535 0.49 -0.5
2,268,299 + SGL_RS12535 0.51 -1.3
2,268,448 - SGL_RS12535 0.60 +0.0
2,268,450 + SGL_RS12535 0.60 +1.2
2,268,458 - SGL_RS12535 0.61 +0.2
2,268,458 - SGL_RS12535 0.61 -0.1
2,268,619 + SGL_RS12535 0.71 -0.2
2,268,852 - SGL_RS12535 0.85 +0.2
2,268,917 + SGL_RS12535 0.89 +0.2
2,268,998 + -0.6
2,269,016 - +0.0
2,269,016 - +0.8
2,269,445 - SGL_RS12540 0.31 -5.9
2,269,513 - SGL_RS12540 0.37 -7.2
2,269,616 + SGL_RS12540 0.47 -3.2
2,269,621 + SGL_RS12540 0.48 -4.3
2,269,750 - SGL_RS12540 0.60 -6.2
2,269,859 - SGL_RS12540 0.71 -8.0
2,270,051 - SGL_RS12540 0.89 -6.4
2,270,087 + -4.3
2,270,197 - -5.4
2,270,204 + -7.3
2,270,204 + -8.2
2,270,214 + -5.2
2,270,317 + -3.3
2,270,319 - -4.8
2,270,463 + -0.7
2,270,554 - +0.1
2,270,710 - -2.2
2,271,062 - SGL_RS12545 0.46 -3.6
2,271,118 - SGL_RS12545 0.52 -3.0
2,271,157 - SGL_RS12545 0.56 -2.0

Or see this region's nucleotide sequence