Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12040

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12030 and SGL_RS12035 are separated by 35 nucleotidesSGL_RS12035 and SGL_RS12040 are separated by 97 nucleotidesSGL_RS12040 and SGL_RS12045 are separated by 100 nucleotidesSGL_RS12045 and SGL_RS12050 are separated by 302 nucleotides SGL_RS12030: SGL_RS12030 - extracellular solute-binding protein, at 2,150,247 to 2,151,401 _RS12030 SGL_RS12035: SGL_RS12035 - tRNA-Thr, at 2,151,437 to 2,151,508 _RS12035 SGL_RS12040: SGL_RS12040 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase, at 2,151,606 to 2,152,190 _RS12040 SGL_RS12045: SGL_RS12045 - P-II family nitrogen regulator, at 2,152,291 to 2,152,629 _RS12045 SGL_RS12050: SGL_RS12050 - DUF1517 domain-containing protein, at 2,152,932 to 2,153,933 _RS12050 Position (kb) 2151 2152 2153Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2150.658 kb on - strand, within SGL_RS12030at 2150.694 kb on + strand, within SGL_RS12030at 2150.749 kb on - strand, within SGL_RS12030at 2150.863 kb on + strand, within SGL_RS12030at 2150.953 kb on - strand, within SGL_RS12030at 2151.119 kb on + strand, within SGL_RS12030at 2151.139 kb on - strand, within SGL_RS12030at 2151.216 kb on - strand, within SGL_RS12030at 2151.339 kb on + strandat 2151.396 kb on + strandat 2151.425 kb on - strandat 2151.532 kb on + strandat 2151.700 kb on - strand, within SGL_RS12040at 2151.881 kb on - strand, within SGL_RS12040at 2151.906 kb on + strand, within SGL_RS12040at 2151.921 kb on - strand, within SGL_RS12040at 2151.950 kb on + strand, within SGL_RS12040at 2152.008 kb on - strand, within SGL_RS12040at 2152.029 kb on - strand, within SGL_RS12040at 2152.207 kb on - strandat 2152.332 kb on - strand, within SGL_RS12045at 2152.420 kb on + strand, within SGL_RS12045at 2152.502 kb on + strand, within SGL_RS12045at 2152.829 kb on - strandat 2152.843 kb on + strandat 2152.851 kb on - strandat 2152.951 kb on + strandat 2153.077 kb on + strand, within SGL_RS12050

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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2,150,658 - SGL_RS12030 0.36 -3.0
2,150,694 + SGL_RS12030 0.39 -2.2
2,150,749 - SGL_RS12030 0.43 -1.6
2,150,863 + SGL_RS12030 0.53 -5.3
2,150,953 - SGL_RS12030 0.61 -3.2
2,151,119 + SGL_RS12030 0.75 -3.5
2,151,139 - SGL_RS12030 0.77 -2.3
2,151,216 - SGL_RS12030 0.84 -4.4
2,151,339 + -3.6
2,151,396 + +0.1
2,151,425 - +0.0
2,151,532 + +0.1
2,151,700 - SGL_RS12040 0.16 +0.2
2,151,881 - SGL_RS12040 0.47 +0.0
2,151,906 + SGL_RS12040 0.51 +0.2
2,151,921 - SGL_RS12040 0.54 +0.1
2,151,950 + SGL_RS12040 0.59 -0.3
2,152,008 - SGL_RS12040 0.69 +0.1
2,152,029 - SGL_RS12040 0.72 -0.3
2,152,207 - -1.2
2,152,332 - SGL_RS12045 0.12 -3.2
2,152,420 + SGL_RS12045 0.38 -3.2
2,152,502 + SGL_RS12045 0.62 -3.5
2,152,829 - -1.3
2,152,843 + -0.1
2,152,851 - -0.4
2,152,951 + -0.9
2,153,077 + SGL_RS12050 0.14 -0.7

Or see this region's nucleotide sequence