Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11950

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11945 and SGL_RS11950 are separated by 3 nucleotidesSGL_RS11950 and SGL_RS11955 are separated by 179 nucleotides SGL_RS11945: SGL_RS11945 - sirohydrochlorin chelatase, at 2,132,715 to 2,133,545 _RS11945 SGL_RS11950: SGL_RS11950 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 2,133,549 to 2,134,022 _RS11950 SGL_RS11955: SGL_RS11955 - aminomethyl-transferring glycine dehydrogenase, at 2,134,202 to 2,137,153 _RS11955 Position (kb) 2133 2134 2135Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2132.608 kb on + strandat 2132.655 kb on + strandat 2132.663 kb on - strandat 2132.786 kb on + strandat 2132.799 kb on + strand, within SGL_RS11945at 2132.957 kb on + strand, within SGL_RS11945at 2132.963 kb on + strand, within SGL_RS11945at 2132.963 kb on + strand, within SGL_RS11945at 2132.971 kb on - strand, within SGL_RS11945at 2132.984 kb on + strand, within SGL_RS11945at 2133.053 kb on + strand, within SGL_RS11945at 2133.061 kb on - strand, within SGL_RS11945at 2133.086 kb on - strand, within SGL_RS11945at 2133.096 kb on + strand, within SGL_RS11945at 2133.101 kb on + strand, within SGL_RS11945at 2133.109 kb on - strand, within SGL_RS11945at 2133.109 kb on - strand, within SGL_RS11945at 2133.168 kb on + strand, within SGL_RS11945at 2133.464 kb on - strandat 2133.490 kb on + strandat 2133.546 kb on + strandat 2133.554 kb on - strandat 2133.588 kb on + strandat 2133.596 kb on - strandat 2133.596 kb on - strandat 2133.692 kb on + strand, within SGL_RS11950at 2133.786 kb on + strand, within SGL_RS11950at 2133.864 kb on - strand, within SGL_RS11950at 2133.872 kb on - strand, within SGL_RS11950at 2133.884 kb on - strand, within SGL_RS11950at 2133.886 kb on + strand, within SGL_RS11950at 2133.931 kb on + strand, within SGL_RS11950at 2134.094 kb on + strandat 2134.094 kb on + strandat 2134.094 kb on + strandat 2134.094 kb on + strandat 2134.094 kb on + strandat 2134.094 kb on + strandat 2134.094 kb on + strandat 2134.102 kb on - strandat 2134.102 kb on - strandat 2134.102 kb on - strandat 2134.244 kb on - strandat 2134.251 kb on + strandat 2134.781 kb on + strand, within SGL_RS11955at 2134.839 kb on + strand, within SGL_RS11955at 2135.015 kb on - strand, within SGL_RS11955

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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2,132,608 + +0.9
2,132,655 + +0.5
2,132,663 - +0.6
2,132,786 + -5.1
2,132,799 + SGL_RS11945 0.10 -5.9
2,132,957 + SGL_RS11945 0.29 -5.8
2,132,963 + SGL_RS11945 0.30 -4.8
2,132,963 + SGL_RS11945 0.30 -4.4
2,132,971 - SGL_RS11945 0.31 -6.5
2,132,984 + SGL_RS11945 0.32 -4.4
2,133,053 + SGL_RS11945 0.41 -5.1
2,133,061 - SGL_RS11945 0.42 -5.9
2,133,086 - SGL_RS11945 0.45 -6.2
2,133,096 + SGL_RS11945 0.46 -6.7
2,133,101 + SGL_RS11945 0.46 -3.3
2,133,109 - SGL_RS11945 0.47 -5.8
2,133,109 - SGL_RS11945 0.47 -5.2
2,133,168 + SGL_RS11945 0.55 -6.7
2,133,464 - -4.3
2,133,490 + -6.6
2,133,546 + +0.2
2,133,554 - +0.5
2,133,588 + -5.4
2,133,596 - -5.3
2,133,596 - -5.6
2,133,692 + SGL_RS11950 0.30 -4.6
2,133,786 + SGL_RS11950 0.50 -5.3
2,133,864 - SGL_RS11950 0.66 -5.6
2,133,872 - SGL_RS11950 0.68 -3.6
2,133,884 - SGL_RS11950 0.71 -5.5
2,133,886 + SGL_RS11950 0.71 -5.6
2,133,931 + SGL_RS11950 0.81 -4.1
2,134,094 + +0.2
2,134,094 + +0.2
2,134,094 + -0.2
2,134,094 + -0.4
2,134,094 + -0.2
2,134,094 + -0.3
2,134,094 + +0.1
2,134,102 - +0.0
2,134,102 - +0.0
2,134,102 - +0.6
2,134,244 - -2.3
2,134,251 + -4.4
2,134,781 + SGL_RS11955 0.20 -3.8
2,134,839 + SGL_RS11955 0.22 -2.0
2,135,015 - SGL_RS11955 0.28 -3.2

Or see this region's nucleotide sequence