Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11635

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11630 and SGL_RS11635 are separated by 91 nucleotidesSGL_RS11635 and SGL_RS11640 are separated by 324 nucleotides SGL_RS11630: SGL_RS11630 - phycobilisome linker polypeptide, at 2,067,522 to 2,068,763 _RS11630 SGL_RS11635: SGL_RS11635 - HAD family hydrolase, at 2,068,855 to 2,069,694 _RS11635 SGL_RS11640: SGL_RS11640 - tetratricopeptide repeat protein, at 2,070,019 to 2,070,891 _RS11640 Position (kb) 2068 2069 2070Strain fitness (log2 ratio) -2 -1 0 1at 2068.891 kb on + strandat 2068.980 kb on - strand, within SGL_RS11635at 2069.304 kb on + strand, within SGL_RS11635at 2069.330 kb on - strand, within SGL_RS11635at 2069.409 kb on + strand, within SGL_RS11635at 2069.468 kb on + strand, within SGL_RS11635at 2069.476 kb on - strand, within SGL_RS11635at 2069.476 kb on - strand, within SGL_RS11635at 2069.476 kb on - strand, within SGL_RS11635at 2069.477 kb on - strand, within SGL_RS11635at 2069.593 kb on + strand, within SGL_RS11635at 2069.593 kb on + strand, within SGL_RS11635at 2069.654 kb on - strandat 2069.668 kb on + strandat 2069.696 kb on + strandat 2069.819 kb on - strandat 2069.825 kb on + strandat 2070.077 kb on - strandat 2070.096 kb on - strandat 2070.169 kb on + strand, within SGL_RS11640at 2070.170 kb on - strand, within SGL_RS11640at 2070.312 kb on + strand, within SGL_RS11640at 2070.312 kb on + strand, within SGL_RS11640at 2070.328 kb on + strand, within SGL_RS11640at 2070.354 kb on + strand, within SGL_RS11640at 2070.362 kb on - strand, within SGL_RS11640at 2070.362 kb on - strand, within SGL_RS11640at 2070.543 kb on + strand, within SGL_RS11640at 2070.627 kb on + strand, within SGL_RS11640at 2070.690 kb on - strand, within SGL_RS11640

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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2,068,891 + -0.2
2,068,980 - SGL_RS11635 0.15 -1.2
2,069,304 + SGL_RS11635 0.53 -1.2
2,069,330 - SGL_RS11635 0.57 -0.5
2,069,409 + SGL_RS11635 0.66 -1.7
2,069,468 + SGL_RS11635 0.73 -2.2
2,069,476 - SGL_RS11635 0.74 +0.3
2,069,476 - SGL_RS11635 0.74 -0.9
2,069,476 - SGL_RS11635 0.74 -1.4
2,069,477 - SGL_RS11635 0.74 -1.9
2,069,593 + SGL_RS11635 0.88 -0.9
2,069,593 + SGL_RS11635 0.88 -1.3
2,069,654 - -1.6
2,069,668 + -1.4
2,069,696 + -1.0
2,069,819 - +0.0
2,069,825 + +1.4
2,070,077 - +0.3
2,070,096 - +0.2
2,070,169 + SGL_RS11640 0.17 -0.2
2,070,170 - SGL_RS11640 0.17 -0.1
2,070,312 + SGL_RS11640 0.34 -0.0
2,070,312 + SGL_RS11640 0.34 -0.1
2,070,328 + SGL_RS11640 0.35 -0.2
2,070,354 + SGL_RS11640 0.38 -0.8
2,070,362 - SGL_RS11640 0.39 -0.1
2,070,362 - SGL_RS11640 0.39 -1.8
2,070,543 + SGL_RS11640 0.60 +0.2
2,070,627 + SGL_RS11640 0.70 +0.2
2,070,690 - SGL_RS11640 0.77 -0.1

Or see this region's nucleotide sequence