Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11170

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11160 and SGL_RS11165 are separated by 17 nucleotidesSGL_RS11165 and SGL_RS11170 are separated by 196 nucleotidesSGL_RS11170 and SGL_RS11175 are separated by 349 nucleotides SGL_RS11160: SGL_RS11160 - ParA family protein, at 1,962,705 to 1,965,467 _RS11160 SGL_RS11165: SGL_RS11165 - hypothetical protein, at 1,965,485 to 1,965,949 _RS11165 SGL_RS11170: SGL_RS11170 - L-glutamate gamma-semialdehyde dehydrogenase, at 1,966,146 to 1,969,118 _RS11170 SGL_RS11175: SGL_RS11175 - hypothetical protein, at 1,969,468 to 1,970,430 _RS11175 Position (kb) 1966 1967 1968 1969 1970Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1965.598 kb on - strand, within SGL_RS11165at 1965.720 kb on - strand, within SGL_RS11165at 1966.101 kb on + strandat 1966.196 kb on + strandat 1966.204 kb on - strandat 1966.430 kb on - strandat 1966.504 kb on + strand, within SGL_RS11170at 1966.529 kb on + strand, within SGL_RS11170at 1966.591 kb on + strand, within SGL_RS11170at 1966.591 kb on + strand, within SGL_RS11170at 1966.599 kb on - strand, within SGL_RS11170at 1966.599 kb on - strand, within SGL_RS11170at 1966.616 kb on - strand, within SGL_RS11170at 1966.623 kb on + strand, within SGL_RS11170at 1966.624 kb on + strand, within SGL_RS11170at 1966.660 kb on + strand, within SGL_RS11170at 1966.668 kb on - strand, within SGL_RS11170at 1966.797 kb on + strand, within SGL_RS11170at 1966.797 kb on + strand, within SGL_RS11170at 1966.808 kb on - strand, within SGL_RS11170at 1967.011 kb on + strand, within SGL_RS11170at 1967.050 kb on - strand, within SGL_RS11170at 1967.050 kb on - strand, within SGL_RS11170at 1967.050 kb on - strand, within SGL_RS11170at 1967.050 kb on - strand, within SGL_RS11170at 1967.051 kb on - strand, within SGL_RS11170at 1967.113 kb on + strand, within SGL_RS11170at 1967.131 kb on - strand, within SGL_RS11170at 1967.159 kb on + strand, within SGL_RS11170at 1967.278 kb on - strand, within SGL_RS11170at 1967.368 kb on - strand, within SGL_RS11170at 1967.371 kb on + strand, within SGL_RS11170at 1967.436 kb on - strand, within SGL_RS11170at 1967.497 kb on + strand, within SGL_RS11170at 1967.507 kb on + strand, within SGL_RS11170at 1967.507 kb on + strand, within SGL_RS11170at 1967.520 kb on - strand, within SGL_RS11170at 1967.575 kb on - strand, within SGL_RS11170at 1967.605 kb on + strand, within SGL_RS11170at 1967.636 kb on + strand, within SGL_RS11170at 1967.660 kb on - strand, within SGL_RS11170at 1967.670 kb on + strand, within SGL_RS11170at 1967.724 kb on - strand, within SGL_RS11170at 1967.878 kb on + strand, within SGL_RS11170at 1967.891 kb on - strand, within SGL_RS11170at 1967.919 kb on + strand, within SGL_RS11170at 1967.919 kb on + strand, within SGL_RS11170at 1967.927 kb on - strand, within SGL_RS11170at 1967.927 kb on - strand, within SGL_RS11170at 1967.927 kb on - strand, within SGL_RS11170at 1967.933 kb on - strand, within SGL_RS11170at 1968.000 kb on + strand, within SGL_RS11170at 1968.005 kb on + strand, within SGL_RS11170at 1968.007 kb on + strand, within SGL_RS11170at 1968.008 kb on - strand, within SGL_RS11170at 1968.082 kb on + strand, within SGL_RS11170at 1968.215 kb on + strand, within SGL_RS11170at 1968.227 kb on + strand, within SGL_RS11170at 1968.282 kb on + strand, within SGL_RS11170at 1968.360 kb on + strand, within SGL_RS11170at 1968.368 kb on - strand, within SGL_RS11170at 1968.443 kb on - strand, within SGL_RS11170at 1968.706 kb on - strand, within SGL_RS11170at 1968.961 kb on - strandat 1969.047 kb on + strandat 1969.237 kb on - strandat 1969.553 kb on + strandat 1969.576 kb on + strand, within SGL_RS11175at 1969.584 kb on - strand, within SGL_RS11175at 1969.604 kb on + strand, within SGL_RS11175at 1969.659 kb on + strand, within SGL_RS11175at 1969.660 kb on + strand, within SGL_RS11175at 1969.803 kb on + strand, within SGL_RS11175

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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1,965,598 - SGL_RS11165 0.24 -0.2
1,965,720 - SGL_RS11165 0.51 -1.2
1,966,101 + -0.5
1,966,196 + -4.6
1,966,204 - -6.3
1,966,430 - -1.2
1,966,504 + SGL_RS11170 0.12 -5.7
1,966,529 + SGL_RS11170 0.13 -3.3
1,966,591 + SGL_RS11170 0.15 -4.3
1,966,591 + SGL_RS11170 0.15 -3.2
1,966,599 - SGL_RS11170 0.15 -3.7
1,966,599 - SGL_RS11170 0.15 -3.7
1,966,616 - SGL_RS11170 0.16 -2.7
1,966,623 + SGL_RS11170 0.16 -5.4
1,966,624 + SGL_RS11170 0.16 -3.5
1,966,660 + SGL_RS11170 0.17 -3.6
1,966,668 - SGL_RS11170 0.18 -3.9
1,966,797 + SGL_RS11170 0.22 -4.8
1,966,797 + SGL_RS11170 0.22 -3.5
1,966,808 - SGL_RS11170 0.22 -4.2
1,967,011 + SGL_RS11170 0.29 -3.5
1,967,050 - SGL_RS11170 0.30 -3.0
1,967,050 - SGL_RS11170 0.30 -3.0
1,967,050 - SGL_RS11170 0.30 -3.6
1,967,050 - SGL_RS11170 0.30 -3.5
1,967,051 - SGL_RS11170 0.30 -5.6
1,967,113 + SGL_RS11170 0.33 -2.7
1,967,131 - SGL_RS11170 0.33 -5.7
1,967,159 + SGL_RS11170 0.34 -3.7
1,967,278 - SGL_RS11170 0.38 -3.6
1,967,368 - SGL_RS11170 0.41 -4.8
1,967,371 + SGL_RS11170 0.41 -5.3
1,967,436 - SGL_RS11170 0.43 -3.2
1,967,497 + SGL_RS11170 0.45 -3.3
1,967,507 + SGL_RS11170 0.46 -4.1
1,967,507 + SGL_RS11170 0.46 -3.2
1,967,520 - SGL_RS11170 0.46 -2.7
1,967,575 - SGL_RS11170 0.48 -3.8
1,967,605 + SGL_RS11170 0.49 -3.5
1,967,636 + SGL_RS11170 0.50 -3.3
1,967,660 - SGL_RS11170 0.51 -3.1
1,967,670 + SGL_RS11170 0.51 -3.5
1,967,724 - SGL_RS11170 0.53 -4.0
1,967,878 + SGL_RS11170 0.58 -3.2
1,967,891 - SGL_RS11170 0.59 -4.9
1,967,919 + SGL_RS11170 0.60 -3.3
1,967,919 + SGL_RS11170 0.60 -3.8
1,967,927 - SGL_RS11170 0.60 -3.2
1,967,927 - SGL_RS11170 0.60 -3.9
1,967,927 - SGL_RS11170 0.60 -3.8
1,967,933 - SGL_RS11170 0.60 -3.9
1,968,000 + SGL_RS11170 0.62 -4.6
1,968,005 + SGL_RS11170 0.63 -3.2
1,968,007 + SGL_RS11170 0.63 -2.6
1,968,008 - SGL_RS11170 0.63 -3.9
1,968,082 + SGL_RS11170 0.65 -3.6
1,968,215 + SGL_RS11170 0.70 -4.2
1,968,227 + SGL_RS11170 0.70 -3.7
1,968,282 + SGL_RS11170 0.72 -7.0
1,968,360 + SGL_RS11170 0.74 -3.3
1,968,368 - SGL_RS11170 0.75 -4.4
1,968,443 - SGL_RS11170 0.77 -4.2
1,968,706 - SGL_RS11170 0.86 -3.5
1,968,961 - -2.4
1,969,047 + -3.8
1,969,237 - -0.5
1,969,553 + +0.1
1,969,576 + SGL_RS11175 0.11 -0.3
1,969,584 - SGL_RS11175 0.12 -0.2
1,969,604 + SGL_RS11175 0.14 -0.5
1,969,659 + SGL_RS11175 0.20 +0.1
1,969,660 + SGL_RS11175 0.20 -0.0
1,969,803 + SGL_RS11175 0.35 +0.1

Or see this region's nucleotide sequence