Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09835

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09825 and SGL_RS09830 are separated by 148 nucleotidesSGL_RS09830 and SGL_RS09835 are separated by 50 nucleotidesSGL_RS09835 and SGL_RS09840 overlap by 1 nucleotidesSGL_RS09840 and SGL_RS09845 are separated by 67 nucleotides SGL_RS09825: SGL_RS09825 - SDR family oxidoreductase, at 1,690,005 to 1,690,934 _RS09825 SGL_RS09830: SGL_RS09830 - DUF4351 domain-containing protein, at 1,691,083 to 1,691,442 _RS09830 SGL_RS09835: SGL_RS09835 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 1,691,493 to 1,692,332 _RS09835 SGL_RS09840: SGL_RS09840 - hypothetical protein, at 1,692,332 to 1,692,559 _RS09840 SGL_RS09845: SGL_RS09845 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 1,692,627 to 1,693,538 _RS09845 Position (kb) 1691 1692 1693Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1691.062 kb on - strandat 1691.120 kb on + strand, within SGL_RS09830at 1691.179 kb on + strand, within SGL_RS09830at 1691.207 kb on - strand, within SGL_RS09830at 1691.352 kb on + strand, within SGL_RS09830at 1691.365 kb on + strand, within SGL_RS09830at 1691.373 kb on - strand, within SGL_RS09830at 1691.390 kb on + strand, within SGL_RS09830at 1691.398 kb on - strand, within SGL_RS09830at 1691.497 kb on - strandat 1691.531 kb on + strandat 1691.592 kb on + strand, within SGL_RS09835at 1691.608 kb on - strand, within SGL_RS09835at 1691.650 kb on - strand, within SGL_RS09835at 1691.793 kb on - strand, within SGL_RS09835at 1691.886 kb on - strand, within SGL_RS09835at 1691.963 kb on + strand, within SGL_RS09835at 1691.971 kb on - strand, within SGL_RS09835at 1691.985 kb on + strand, within SGL_RS09835at 1692.025 kb on - strand, within SGL_RS09835at 1692.051 kb on + strand, within SGL_RS09835at 1692.059 kb on - strand, within SGL_RS09835at 1692.140 kb on + strand, within SGL_RS09835at 1692.140 kb on + strand, within SGL_RS09835at 1692.373 kb on + strand, within SGL_RS09840at 1692.373 kb on + strand, within SGL_RS09840at 1692.413 kb on + strand, within SGL_RS09840at 1692.464 kb on + strand, within SGL_RS09840at 1692.472 kb on - strand, within SGL_RS09840at 1692.551 kb on - strandat 1692.780 kb on - strand, within SGL_RS09845at 1692.842 kb on + strand, within SGL_RS09845at 1692.844 kb on + strand, within SGL_RS09845at 1692.852 kb on - strand, within SGL_RS09845at 1692.865 kb on + strand, within SGL_RS09845at 1692.865 kb on + strand, within SGL_RS09845at 1692.873 kb on - strand, within SGL_RS09845at 1693.077 kb on - strand, within SGL_RS09845at 1693.149 kb on + strand, within SGL_RS09845at 1693.185 kb on + strand, within SGL_RS09845at 1693.194 kb on - strand, within SGL_RS09845at 1693.230 kb on + strand, within SGL_RS09845at 1693.298 kb on - strand, within SGL_RS09845

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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1,691,062 - +0.2
1,691,120 + SGL_RS09830 0.10 +0.1
1,691,179 + SGL_RS09830 0.27 +0.4
1,691,207 - SGL_RS09830 0.34 +0.7
1,691,352 + SGL_RS09830 0.75 -0.0
1,691,365 + SGL_RS09830 0.78 -0.2
1,691,373 - SGL_RS09830 0.81 +0.0
1,691,390 + SGL_RS09830 0.85 +0.0
1,691,398 - SGL_RS09830 0.88 -0.1
1,691,497 - +0.1
1,691,531 + -0.9
1,691,592 + SGL_RS09835 0.12 -1.2
1,691,608 - SGL_RS09835 0.14 -1.2
1,691,650 - SGL_RS09835 0.19 -2.2
1,691,793 - SGL_RS09835 0.36 -1.1
1,691,886 - SGL_RS09835 0.47 -0.9
1,691,963 + SGL_RS09835 0.56 -0.9
1,691,971 - SGL_RS09835 0.57 -1.0
1,691,985 + SGL_RS09835 0.59 -1.5
1,692,025 - SGL_RS09835 0.63 -1.0
1,692,051 + SGL_RS09835 0.66 -1.1
1,692,059 - SGL_RS09835 0.67 -1.4
1,692,140 + SGL_RS09835 0.77 -0.3
1,692,140 + SGL_RS09835 0.77 -0.8
1,692,373 + SGL_RS09840 0.18 -0.8
1,692,373 + SGL_RS09840 0.18 -1.4
1,692,413 + SGL_RS09840 0.36 -0.6
1,692,464 + SGL_RS09840 0.58 +0.5
1,692,472 - SGL_RS09840 0.61 -0.1
1,692,551 - -0.2
1,692,780 - SGL_RS09845 0.17 -3.8
1,692,842 + SGL_RS09845 0.24 -2.9
1,692,844 + SGL_RS09845 0.24 -4.7
1,692,852 - SGL_RS09845 0.25 -5.4
1,692,865 + SGL_RS09845 0.26 -4.0
1,692,865 + SGL_RS09845 0.26 -2.1
1,692,873 - SGL_RS09845 0.27 -4.0
1,693,077 - SGL_RS09845 0.49 -2.7
1,693,149 + SGL_RS09845 0.57 -3.2
1,693,185 + SGL_RS09845 0.61 -5.3
1,693,194 - SGL_RS09845 0.62 -3.1
1,693,230 + SGL_RS09845 0.66 -4.7
1,693,298 - SGL_RS09845 0.74 -4.8

Or see this region's nucleotide sequence