Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09715

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09705 and SGL_RS09710 are separated by 147 nucleotidesSGL_RS09710 and SGL_RS09715 are separated by 183 nucleotidesSGL_RS09715 and SGL_RS09720 are separated by 7 nucleotides SGL_RS09705: SGL_RS09705 - F0F1 ATP synthase subunit beta, at 1,666,932 to 1,668,383 _RS09705 SGL_RS09710: SGL_RS09710 - ATP synthase F1 subunit epsilon, at 1,668,531 to 1,668,941 _RS09710 SGL_RS09715: SGL_RS09715 - pitrilysin family protein, at 1,669,125 to 1,670,642 _RS09715 SGL_RS09720: SGL_RS09720 - beta-ketoacyl-ACP synthase, at 1,670,650 to 1,671,864 _RS09720 Position (kb) 1669 1670 1671Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1668.936 kb on + strandat 1668.956 kb on - strandat 1668.967 kb on - strandat 1669.300 kb on + strand, within SGL_RS09715at 1669.624 kb on + strand, within SGL_RS09715at 1669.647 kb on + strand, within SGL_RS09715at 1669.783 kb on + strand, within SGL_RS09715at 1669.808 kb on - strand, within SGL_RS09715at 1669.875 kb on - strand, within SGL_RS09715at 1669.889 kb on - strand, within SGL_RS09715at 1669.956 kb on + strand, within SGL_RS09715at 1670.079 kb on + strand, within SGL_RS09715at 1670.097 kb on - strand, within SGL_RS09715at 1670.098 kb on + strand, within SGL_RS09715at 1670.189 kb on - strand, within SGL_RS09715at 1670.211 kb on + strand, within SGL_RS09715at 1670.211 kb on + strand, within SGL_RS09715at 1670.211 kb on + strand, within SGL_RS09715at 1670.211 kb on + strand, within SGL_RS09715at 1670.219 kb on - strand, within SGL_RS09715at 1670.219 kb on - strand, within SGL_RS09715at 1670.305 kb on + strand, within SGL_RS09715at 1670.342 kb on - strand, within SGL_RS09715at 1670.586 kb on + strandat 1670.587 kb on + strandat 1670.688 kb on + strandat 1670.722 kb on + strandat 1670.725 kb on - strandat 1670.730 kb on - strandat 1670.884 kb on + strand, within SGL_RS09720at 1670.956 kb on - strand, within SGL_RS09720at 1671.004 kb on - strand, within SGL_RS09720at 1671.084 kb on - strand, within SGL_RS09720at 1671.134 kb on + strand, within SGL_RS09720at 1671.142 kb on - strand, within SGL_RS09720at 1671.170 kb on + strand, within SGL_RS09720at 1671.310 kb on - strand, within SGL_RS09720at 1671.530 kb on + strand, within SGL_RS09720at 1671.626 kb on + strand, within SGL_RS09720at 1671.626 kb on + strand, within SGL_RS09720at 1671.634 kb on - strand, within SGL_RS09720at 1671.634 kb on - strand, within SGL_RS09720

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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1,668,936 + -0.6
1,668,956 - -0.4
1,668,967 - -0.1
1,669,300 + SGL_RS09715 0.12 -4.1
1,669,624 + SGL_RS09715 0.33 -4.0
1,669,647 + SGL_RS09715 0.34 -5.3
1,669,783 + SGL_RS09715 0.43 -3.1
1,669,808 - SGL_RS09715 0.45 -2.8
1,669,875 - SGL_RS09715 0.49 -6.5
1,669,889 - SGL_RS09715 0.50 -4.2
1,669,956 + SGL_RS09715 0.55 -4.4
1,670,079 + SGL_RS09715 0.63 -2.4
1,670,097 - SGL_RS09715 0.64 -5.1
1,670,098 + SGL_RS09715 0.64 -3.4
1,670,189 - SGL_RS09715 0.70 -4.6
1,670,211 + SGL_RS09715 0.72 -5.6
1,670,211 + SGL_RS09715 0.72 -4.9
1,670,211 + SGL_RS09715 0.72 -6.5
1,670,211 + SGL_RS09715 0.72 -6.4
1,670,219 - SGL_RS09715 0.72 -4.5
1,670,219 - SGL_RS09715 0.72 -4.9
1,670,305 + SGL_RS09715 0.78 -5.4
1,670,342 - SGL_RS09715 0.80 -4.2
1,670,586 + -3.9
1,670,587 + -1.3
1,670,688 + +0.2
1,670,722 + -3.1
1,670,725 - -3.2
1,670,730 - -3.5
1,670,884 + SGL_RS09720 0.19 -3.1
1,670,956 - SGL_RS09720 0.25 -3.5
1,671,004 - SGL_RS09720 0.29 -1.6
1,671,084 - SGL_RS09720 0.36 -2.1
1,671,134 + SGL_RS09720 0.40 -1.9
1,671,142 - SGL_RS09720 0.40 -3.2
1,671,170 + SGL_RS09720 0.43 -1.6
1,671,310 - SGL_RS09720 0.54 -3.8
1,671,530 + SGL_RS09720 0.72 +0.5
1,671,626 + SGL_RS09720 0.80 -2.4
1,671,626 + SGL_RS09720 0.80 -2.6
1,671,634 - SGL_RS09720 0.81 -3.5
1,671,634 - SGL_RS09720 0.81 -2.9

Or see this region's nucleotide sequence