Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09235

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09230 and SGL_RS09235 are separated by 172 nucleotidesSGL_RS09235 and SGL_RS09240 are separated by 380 nucleotides SGL_RS09230: SGL_RS09230 - GldG family protein, at 1,576,765 to 1,578,552 _RS09230 SGL_RS09235: SGL_RS09235 - adenine phosphoribosyltransferase, at 1,578,725 to 1,579,243 _RS09235 SGL_RS09240: SGL_RS09240 - restriction endonuclease, at 1,579,624 to 1,580,538 _RS09240 Position (kb) 1578 1579 1580Strain fitness (log2 ratio) -2 -1 0 1at 1577.783 kb on + strand, within SGL_RS09230at 1577.899 kb on + strand, within SGL_RS09230at 1578.007 kb on - strand, within SGL_RS09230at 1578.024 kb on - strand, within SGL_RS09230at 1578.077 kb on - strand, within SGL_RS09230at 1578.077 kb on - strand, within SGL_RS09230at 1578.099 kb on + strand, within SGL_RS09230at 1578.125 kb on + strand, within SGL_RS09230at 1578.125 kb on + strand, within SGL_RS09230at 1578.125 kb on + strand, within SGL_RS09230at 1578.133 kb on - strand, within SGL_RS09230at 1578.164 kb on - strand, within SGL_RS09230at 1578.246 kb on + strand, within SGL_RS09230at 1578.280 kb on - strand, within SGL_RS09230at 1578.316 kb on + strand, within SGL_RS09230at 1578.518 kb on + strandat 1578.520 kb on - strandat 1578.588 kb on + strandat 1578.859 kb on - strand, within SGL_RS09235at 1579.089 kb on - strand, within SGL_RS09235at 1579.113 kb on - strand, within SGL_RS09235at 1579.145 kb on - strand, within SGL_RS09235at 1579.150 kb on + strand, within SGL_RS09235at 1579.252 kb on + strandat 1579.253 kb on + strandat 1579.261 kb on - strandat 1579.293 kb on + strandat 1579.301 kb on - strandat 1579.344 kb on + strandat 1579.352 kb on - strandat 1579.429 kb on - strandat 1579.457 kb on + strandat 1579.556 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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1,577,783 + SGL_RS09230 0.57 -0.6
1,577,899 + SGL_RS09230 0.63 -0.5
1,578,007 - SGL_RS09230 0.69 -1.0
1,578,024 - SGL_RS09230 0.70 -0.7
1,578,077 - SGL_RS09230 0.73 -0.3
1,578,077 - SGL_RS09230 0.73 +0.1
1,578,099 + SGL_RS09230 0.75 -0.7
1,578,125 + SGL_RS09230 0.76 -0.1
1,578,125 + SGL_RS09230 0.76 -0.3
1,578,125 + SGL_RS09230 0.76 -0.4
1,578,133 - SGL_RS09230 0.77 -0.9
1,578,164 - SGL_RS09230 0.78 -0.3
1,578,246 + SGL_RS09230 0.83 +0.5
1,578,280 - SGL_RS09230 0.85 -1.0
1,578,316 + SGL_RS09230 0.87 -2.2
1,578,518 + -0.7
1,578,520 - -0.9
1,578,588 + -0.5
1,578,859 - SGL_RS09235 0.26 -0.7
1,579,089 - SGL_RS09235 0.70 -0.8
1,579,113 - SGL_RS09235 0.75 +0.0
1,579,145 - SGL_RS09235 0.81 -0.8
1,579,150 + SGL_RS09235 0.82 -0.9
1,579,252 + -0.5
1,579,253 + -0.7
1,579,261 - -0.3
1,579,293 + +0.5
1,579,301 - +0.2
1,579,344 + +0.1
1,579,352 - -0.1
1,579,429 - +0.1
1,579,457 + +0.7
1,579,556 + -0.2

Or see this region's nucleotide sequence