Experiment: D-Sorbitol 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08810 and SGL_RS08815 overlap by 4 nucleotides SGL_RS08815 and SGL_RS08820 are separated by 98 nucleotides SGL_RS08820 and SGL_RS08825 are separated by 137 nucleotides SGL_RS08825 and SGL_RS08830 are separated by 167 nucleotides
SGL_RS08810: SGL_RS08810 - metal ABC transporter permease, at 1,480,463 to 1,481,383
_RS08810
SGL_RS08815: SGL_RS08815 - metal ABC transporter ATP-binding protein, at 1,481,380 to 1,482,162
_RS08815
SGL_RS08820: SGL_RS08820 - metal ABC transporter substrate-binding protein, at 1,482,261 to 1,483,253
_RS08820
SGL_RS08825: SGL_RS08825 - IS5 family transposase, at 1,483,391 to 1,484,044
_RS08825
SGL_RS08830: SGL_RS08830 - circadian clock KaiB family protein, at 1,484,212 to 1,484,538
_RS08830
Position (kb)
1482
1483
1484 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 1481.279 kb on - strand, within SGL_RS08810 at 1481.338 kb on + strand at 1481.358 kb on + strand at 1481.488 kb on - strand, within SGL_RS08815 at 1481.688 kb on - strand, within SGL_RS08815 at 1482.068 kb on + strand, within SGL_RS08815 at 1482.153 kb on - strand at 1482.206 kb on + strand at 1482.405 kb on + strand, within SGL_RS08820 at 1482.405 kb on + strand, within SGL_RS08820 at 1482.405 kb on + strand, within SGL_RS08820 at 1482.413 kb on - strand, within SGL_RS08820 at 1482.665 kb on + strand, within SGL_RS08820 at 1482.730 kb on - strand, within SGL_RS08820 at 1482.746 kb on - strand, within SGL_RS08820 at 1482.767 kb on + strand, within SGL_RS08820 at 1482.882 kb on - strand, within SGL_RS08820 at 1482.977 kb on + strand, within SGL_RS08820 at 1483.052 kb on - strand, within SGL_RS08820 at 1483.190 kb on + strand at 1483.255 kb on + strand at 1483.257 kb on - strand at 1483.276 kb on - strand at 1483.366 kb on + strand at 1483.421 kb on - strand at 1483.422 kb on + strand at 1483.702 kb on - strand, within SGL_RS08825 at 1483.840 kb on - strand, within SGL_RS08825
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM remove 1,481,279 - SGL_RS08810 0.89 -2.6 1,481,338 + -5.8 1,481,358 + -3.1 1,481,488 - SGL_RS08815 0.14 -3.9 1,481,688 - SGL_RS08815 0.39 -7.2 1,482,068 + SGL_RS08815 0.88 -6.1 1,482,153 - -3.3 1,482,206 + -2.1 1,482,405 + SGL_RS08820 0.15 -4.8 1,482,405 + SGL_RS08820 0.15 -3.2 1,482,405 + SGL_RS08820 0.15 -4.7 1,482,413 - SGL_RS08820 0.15 -4.1 1,482,665 + SGL_RS08820 0.41 -5.3 1,482,730 - SGL_RS08820 0.47 -3.4 1,482,746 - SGL_RS08820 0.49 -5.3 1,482,767 + SGL_RS08820 0.51 -3.1 1,482,882 - SGL_RS08820 0.63 -5.7 1,482,977 + SGL_RS08820 0.72 -4.0 1,483,052 - SGL_RS08820 0.80 -5.2 1,483,190 + -4.8 1,483,255 + -6.0 1,483,257 - -2.2 1,483,276 - -4.6 1,483,366 + +0.0 1,483,421 - +0.2 1,483,422 + +0.0 1,483,702 - SGL_RS08825 0.48 +0.0 1,483,840 - SGL_RS08825 0.69 -0.4
Or see this region's nucleotide sequence