Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08820

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08810 and SGL_RS08815 overlap by 4 nucleotidesSGL_RS08815 and SGL_RS08820 are separated by 98 nucleotidesSGL_RS08820 and SGL_RS08825 are separated by 137 nucleotidesSGL_RS08825 and SGL_RS08830 are separated by 167 nucleotides SGL_RS08810: SGL_RS08810 - metal ABC transporter permease, at 1,480,463 to 1,481,383 _RS08810 SGL_RS08815: SGL_RS08815 - metal ABC transporter ATP-binding protein, at 1,481,380 to 1,482,162 _RS08815 SGL_RS08820: SGL_RS08820 - metal ABC transporter substrate-binding protein, at 1,482,261 to 1,483,253 _RS08820 SGL_RS08825: SGL_RS08825 - IS5 family transposase, at 1,483,391 to 1,484,044 _RS08825 SGL_RS08830: SGL_RS08830 - circadian clock KaiB family protein, at 1,484,212 to 1,484,538 _RS08830 Position (kb) 1482 1483 1484Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1481.279 kb on - strand, within SGL_RS08810at 1481.338 kb on + strandat 1481.358 kb on + strandat 1481.488 kb on - strand, within SGL_RS08815at 1481.688 kb on - strand, within SGL_RS08815at 1482.068 kb on + strand, within SGL_RS08815at 1482.153 kb on - strandat 1482.206 kb on + strandat 1482.405 kb on + strand, within SGL_RS08820at 1482.405 kb on + strand, within SGL_RS08820at 1482.405 kb on + strand, within SGL_RS08820at 1482.413 kb on - strand, within SGL_RS08820at 1482.665 kb on + strand, within SGL_RS08820at 1482.730 kb on - strand, within SGL_RS08820at 1482.746 kb on - strand, within SGL_RS08820at 1482.767 kb on + strand, within SGL_RS08820at 1482.882 kb on - strand, within SGL_RS08820at 1482.977 kb on + strand, within SGL_RS08820at 1483.052 kb on - strand, within SGL_RS08820at 1483.190 kb on + strandat 1483.255 kb on + strandat 1483.257 kb on - strandat 1483.276 kb on - strandat 1483.366 kb on + strandat 1483.421 kb on - strandat 1483.422 kb on + strandat 1483.702 kb on - strand, within SGL_RS08825at 1483.840 kb on - strand, within SGL_RS08825

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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1,481,279 - SGL_RS08810 0.89 -2.6
1,481,338 + -5.8
1,481,358 + -3.1
1,481,488 - SGL_RS08815 0.14 -3.9
1,481,688 - SGL_RS08815 0.39 -7.2
1,482,068 + SGL_RS08815 0.88 -6.1
1,482,153 - -3.3
1,482,206 + -2.1
1,482,405 + SGL_RS08820 0.15 -4.8
1,482,405 + SGL_RS08820 0.15 -3.2
1,482,405 + SGL_RS08820 0.15 -4.7
1,482,413 - SGL_RS08820 0.15 -4.1
1,482,665 + SGL_RS08820 0.41 -5.3
1,482,730 - SGL_RS08820 0.47 -3.4
1,482,746 - SGL_RS08820 0.49 -5.3
1,482,767 + SGL_RS08820 0.51 -3.1
1,482,882 - SGL_RS08820 0.63 -5.7
1,482,977 + SGL_RS08820 0.72 -4.0
1,483,052 - SGL_RS08820 0.80 -5.2
1,483,190 + -4.8
1,483,255 + -6.0
1,483,257 - -2.2
1,483,276 - -4.6
1,483,366 + +0.0
1,483,421 - +0.2
1,483,422 + +0.0
1,483,702 - SGL_RS08825 0.48 +0.0
1,483,840 - SGL_RS08825 0.69 -0.4

Or see this region's nucleotide sequence