Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08815

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08810 and SGL_RS08815 overlap by 4 nucleotidesSGL_RS08815 and SGL_RS08820 are separated by 98 nucleotides SGL_RS08810: SGL_RS08810 - metal ABC transporter permease, at 1,480,463 to 1,481,383 _RS08810 SGL_RS08815: SGL_RS08815 - metal ABC transporter ATP-binding protein, at 1,481,380 to 1,482,162 _RS08815 SGL_RS08820: SGL_RS08820 - metal ABC transporter substrate-binding protein, at 1,482,261 to 1,483,253 _RS08820 Position (kb) 1481 1482 1483Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1480.474 kb on - strandat 1480.573 kb on - strand, within SGL_RS08810at 1480.632 kb on - strand, within SGL_RS08810at 1480.661 kb on + strand, within SGL_RS08810at 1480.663 kb on + strand, within SGL_RS08810at 1480.789 kb on + strand, within SGL_RS08810at 1480.810 kb on - strand, within SGL_RS08810at 1481.041 kb on - strand, within SGL_RS08810at 1481.183 kb on + strand, within SGL_RS08810at 1481.188 kb on + strand, within SGL_RS08810at 1481.188 kb on + strand, within SGL_RS08810at 1481.191 kb on - strand, within SGL_RS08810at 1481.196 kb on - strand, within SGL_RS08810at 1481.279 kb on - strand, within SGL_RS08810at 1481.338 kb on + strandat 1481.358 kb on + strandat 1481.488 kb on - strand, within SGL_RS08815at 1481.688 kb on - strand, within SGL_RS08815at 1482.068 kb on + strand, within SGL_RS08815at 1482.153 kb on - strandat 1482.206 kb on + strandat 1482.405 kb on + strand, within SGL_RS08820at 1482.405 kb on + strand, within SGL_RS08820at 1482.405 kb on + strand, within SGL_RS08820at 1482.413 kb on - strand, within SGL_RS08820at 1482.665 kb on + strand, within SGL_RS08820at 1482.730 kb on - strand, within SGL_RS08820at 1482.746 kb on - strand, within SGL_RS08820at 1482.767 kb on + strand, within SGL_RS08820at 1482.882 kb on - strand, within SGL_RS08820at 1482.977 kb on + strand, within SGL_RS08820at 1483.052 kb on - strand, within SGL_RS08820

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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1,480,474 - -2.2
1,480,573 - SGL_RS08810 0.12 -5.4
1,480,632 - SGL_RS08810 0.18 -5.2
1,480,661 + SGL_RS08810 0.21 -3.3
1,480,663 + SGL_RS08810 0.22 -6.0
1,480,789 + SGL_RS08810 0.35 -4.7
1,480,810 - SGL_RS08810 0.38 -5.5
1,481,041 - SGL_RS08810 0.63 -2.9
1,481,183 + SGL_RS08810 0.78 -5.0
1,481,188 + SGL_RS08810 0.79 -5.8
1,481,188 + SGL_RS08810 0.79 -3.4
1,481,191 - SGL_RS08810 0.79 -3.1
1,481,196 - SGL_RS08810 0.80 -5.8
1,481,279 - SGL_RS08810 0.89 -2.6
1,481,338 + -5.8
1,481,358 + -3.1
1,481,488 - SGL_RS08815 0.14 -3.9
1,481,688 - SGL_RS08815 0.39 -7.2
1,482,068 + SGL_RS08815 0.88 -6.1
1,482,153 - -3.3
1,482,206 + -2.1
1,482,405 + SGL_RS08820 0.15 -4.8
1,482,405 + SGL_RS08820 0.15 -3.2
1,482,405 + SGL_RS08820 0.15 -4.7
1,482,413 - SGL_RS08820 0.15 -4.1
1,482,665 + SGL_RS08820 0.41 -5.3
1,482,730 - SGL_RS08820 0.47 -3.4
1,482,746 - SGL_RS08820 0.49 -5.3
1,482,767 + SGL_RS08820 0.51 -3.1
1,482,882 - SGL_RS08820 0.63 -5.7
1,482,977 + SGL_RS08820 0.72 -4.0
1,483,052 - SGL_RS08820 0.80 -5.2

Or see this region's nucleotide sequence