Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08810

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08800 and SGL_RS08805 are separated by 167 nucleotidesSGL_RS08805 and SGL_RS08810 are separated by 285 nucleotidesSGL_RS08810 and SGL_RS08815 overlap by 4 nucleotidesSGL_RS08815 and SGL_RS08820 are separated by 98 nucleotides SGL_RS08800: SGL_RS08800 - DUF3153 domain-containing protein, at 1,478,988 to 1,479,782 _RS08800 SGL_RS08805: SGL_RS08805 - hypothetical protein, at 1,479,950 to 1,480,177 _RS08805 SGL_RS08810: SGL_RS08810 - metal ABC transporter permease, at 1,480,463 to 1,481,383 _RS08810 SGL_RS08815: SGL_RS08815 - metal ABC transporter ATP-binding protein, at 1,481,380 to 1,482,162 _RS08815 SGL_RS08820: SGL_RS08820 - metal ABC transporter substrate-binding protein, at 1,482,261 to 1,483,253 _RS08820 Position (kb) 1480 1481 1482Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1479.777 kb on + strandat 1479.777 kb on + strandat 1479.882 kb on - strandat 1480.474 kb on - strandat 1480.573 kb on - strand, within SGL_RS08810at 1480.632 kb on - strand, within SGL_RS08810at 1480.661 kb on + strand, within SGL_RS08810at 1480.663 kb on + strand, within SGL_RS08810at 1480.789 kb on + strand, within SGL_RS08810at 1480.810 kb on - strand, within SGL_RS08810at 1481.041 kb on - strand, within SGL_RS08810at 1481.183 kb on + strand, within SGL_RS08810at 1481.188 kb on + strand, within SGL_RS08810at 1481.188 kb on + strand, within SGL_RS08810at 1481.191 kb on - strand, within SGL_RS08810at 1481.196 kb on - strand, within SGL_RS08810at 1481.279 kb on - strand, within SGL_RS08810at 1481.338 kb on + strandat 1481.358 kb on + strandat 1481.488 kb on - strand, within SGL_RS08815at 1481.688 kb on - strand, within SGL_RS08815at 1482.068 kb on + strand, within SGL_RS08815at 1482.153 kb on - strandat 1482.206 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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1,479,777 + -0.5
1,479,777 + -0.3
1,479,882 - -0.3
1,480,474 - -2.2
1,480,573 - SGL_RS08810 0.12 -5.4
1,480,632 - SGL_RS08810 0.18 -5.2
1,480,661 + SGL_RS08810 0.21 -3.3
1,480,663 + SGL_RS08810 0.22 -6.0
1,480,789 + SGL_RS08810 0.35 -4.7
1,480,810 - SGL_RS08810 0.38 -5.5
1,481,041 - SGL_RS08810 0.63 -2.9
1,481,183 + SGL_RS08810 0.78 -5.0
1,481,188 + SGL_RS08810 0.79 -5.8
1,481,188 + SGL_RS08810 0.79 -3.4
1,481,191 - SGL_RS08810 0.79 -3.1
1,481,196 - SGL_RS08810 0.80 -5.8
1,481,279 - SGL_RS08810 0.89 -2.6
1,481,338 + -5.8
1,481,358 + -3.1
1,481,488 - SGL_RS08815 0.14 -3.9
1,481,688 - SGL_RS08815 0.39 -7.2
1,482,068 + SGL_RS08815 0.88 -6.1
1,482,153 - -3.3
1,482,206 + -2.1

Or see this region's nucleotide sequence