Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08750

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08745 and SGL_RS08750 are separated by 53 nucleotidesSGL_RS08750 and SGL_RS08755 are separated by 45 nucleotidesSGL_RS08755 and SGL_RS08760 are separated by 40 nucleotidesSGL_RS08760 and SGL_RS08765 are separated by 42 nucleotides SGL_RS08745: SGL_RS08745 - ATP-dependent sacrificial sulfur transferase LarE, at 1,468,153 to 1,468,959 _RS08745 SGL_RS08750: SGL_RS08750 - YdcF family protein, at 1,469,013 to 1,469,801 _RS08750 SGL_RS08755: SGL_RS08755 - 3-hydroxyacyl-ACP dehydratase FabZ, at 1,469,847 to 1,470,347 _RS08755 SGL_RS08760: SGL_RS08760 - hypothetical protein, at 1,470,388 to 1,470,567 _RS08760 SGL_RS08765: SGL_RS08765 - 2-phosphosulfolactate phosphatase family protein, at 1,470,610 to 1,471,335 _RS08765 Position (kb) 1469 1470Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 1468.231 kb on + strandat 1468.308 kb on - strand, within SGL_RS08745at 1468.375 kb on - strand, within SGL_RS08745at 1468.559 kb on - strand, within SGL_RS08745at 1468.644 kb on + strand, within SGL_RS08745at 1468.644 kb on + strand, within SGL_RS08745at 1468.912 kb on - strandat 1469.030 kb on + strandat 1469.113 kb on - strand, within SGL_RS08750at 1469.191 kb on - strand, within SGL_RS08750at 1469.231 kb on + strand, within SGL_RS08750at 1469.316 kb on - strand, within SGL_RS08750at 1469.367 kb on + strand, within SGL_RS08750at 1469.374 kb on + strand, within SGL_RS08750at 1469.427 kb on - strand, within SGL_RS08750at 1469.475 kb on + strand, within SGL_RS08750at 1469.537 kb on + strand, within SGL_RS08750at 1469.537 kb on + strand, within SGL_RS08750at 1469.545 kb on - strand, within SGL_RS08750at 1469.615 kb on - strand, within SGL_RS08750at 1469.638 kb on - strand, within SGL_RS08750at 1470.483 kb on + strand, within SGL_RS08760

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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1,468,231 + -2.9
1,468,308 - SGL_RS08745 0.19 -3.8
1,468,375 - SGL_RS08745 0.28 -1.7
1,468,559 - SGL_RS08745 0.50 -3.5
1,468,644 + SGL_RS08745 0.61 -3.5
1,468,644 + SGL_RS08745 0.61 -3.1
1,468,912 - -1.7
1,469,030 + -7.3
1,469,113 - SGL_RS08750 0.13 -7.4
1,469,191 - SGL_RS08750 0.23 -4.4
1,469,231 + SGL_RS08750 0.28 -7.8
1,469,316 - SGL_RS08750 0.38 -6.9
1,469,367 + SGL_RS08750 0.45 -5.7
1,469,374 + SGL_RS08750 0.46 -7.7
1,469,427 - SGL_RS08750 0.52 -7.4
1,469,475 + SGL_RS08750 0.59 -6.0
1,469,537 + SGL_RS08750 0.66 -5.2
1,469,537 + SGL_RS08750 0.66 -6.3
1,469,545 - SGL_RS08750 0.67 -6.5
1,469,615 - SGL_RS08750 0.76 -6.8
1,469,638 - SGL_RS08750 0.79 -6.0
1,470,483 + SGL_RS08760 0.53 -0.4

Or see this region's nucleotide sequence