Experiment: D-Sorbitol 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08150 and SGL_RS08155 are separated by 8 nucleotides SGL_RS08155 and SGL_RS08160 are separated by 56 nucleotides SGL_RS08160 and SGL_RS08165 overlap by 11 nucleotides
SGL_RS08150: SGL_RS08150 - deoxyribodipyrimidine photo-lyase, 8-HDF type, at 1,339,656 to 1,341,122
_RS08150
SGL_RS08155: SGL_RS08155 - Spy/CpxP family protein refolding chaperone, at 1,341,131 to 1,341,637
_RS08155
SGL_RS08160: SGL_RS08160 - hypothetical protein, at 1,341,694 to 1,342,062
_RS08160
SGL_RS08165: SGL_RS08165 - sigma-70 family RNA polymerase sigma factor, at 1,342,052 to 1,342,660
_RS08165
Position (kb)
1341
1342 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1340.215 kb on + strand, within SGL_RS08150 at 1340.317 kb on - strand, within SGL_RS08150 at 1340.319 kb on - strand, within SGL_RS08150 at 1340.501 kb on - strand, within SGL_RS08150 at 1340.585 kb on - strand, within SGL_RS08150 at 1340.685 kb on + strand, within SGL_RS08150 at 1340.765 kb on - strand, within SGL_RS08150 at 1340.815 kb on + strand, within SGL_RS08150 at 1340.828 kb on - strand, within SGL_RS08150 at 1340.870 kb on - strand, within SGL_RS08150 at 1340.920 kb on + strand, within SGL_RS08150 at 1341.246 kb on - strand, within SGL_RS08155 at 1341.480 kb on + strand, within SGL_RS08155 at 1341.524 kb on + strand, within SGL_RS08155 at 1341.735 kb on - strand, within SGL_RS08160 at 1341.852 kb on + strand, within SGL_RS08160 at 1341.876 kb on - strand, within SGL_RS08160 at 1341.882 kb on - strand, within SGL_RS08160 at 1341.916 kb on + strand, within SGL_RS08160 at 1341.998 kb on - strand, within SGL_RS08160 at 1342.004 kb on - strand, within SGL_RS08160 at 1342.196 kb on + strand, within SGL_RS08165 at 1342.204 kb on - strand, within SGL_RS08165 at 1342.221 kb on - strand, within SGL_RS08165 at 1342.225 kb on + strand, within SGL_RS08165 at 1342.228 kb on - strand, within SGL_RS08165 at 1342.281 kb on - strand, within SGL_RS08165 at 1342.378 kb on - strand, within SGL_RS08165 at 1342.463 kb on + strand, within SGL_RS08165
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM remove 1,340,215 + SGL_RS08150 0.38 +0.0 1,340,317 - SGL_RS08150 0.45 -0.1 1,340,319 - SGL_RS08150 0.45 +0.3 1,340,501 - SGL_RS08150 0.58 +0.3 1,340,585 - SGL_RS08150 0.63 +0.6 1,340,685 + SGL_RS08150 0.70 +0.1 1,340,765 - SGL_RS08150 0.76 -0.6 1,340,815 + SGL_RS08150 0.79 -0.0 1,340,828 - SGL_RS08150 0.80 +1.1 1,340,870 - SGL_RS08150 0.83 +0.0 1,340,920 + SGL_RS08150 0.86 +0.4 1,341,246 - SGL_RS08155 0.23 -3.8 1,341,480 + SGL_RS08155 0.69 -2.7 1,341,524 + SGL_RS08155 0.78 -3.3 1,341,735 - SGL_RS08160 0.11 -1.6 1,341,852 + SGL_RS08160 0.43 -4.1 1,341,876 - SGL_RS08160 0.49 -1.9 1,341,882 - SGL_RS08160 0.51 -0.2 1,341,916 + SGL_RS08160 0.60 -3.7 1,341,998 - SGL_RS08160 0.82 -4.3 1,342,004 - SGL_RS08160 0.84 -4.1 1,342,196 + SGL_RS08165 0.24 -0.1 1,342,204 - SGL_RS08165 0.25 -0.4 1,342,221 - SGL_RS08165 0.28 -0.2 1,342,225 + SGL_RS08165 0.28 +0.6 1,342,228 - SGL_RS08165 0.29 +0.2 1,342,281 - SGL_RS08165 0.38 -0.3 1,342,378 - SGL_RS08165 0.54 +0.0 1,342,463 + SGL_RS08165 0.67 +0.6
Or see this region's nucleotide sequence