Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08135

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08130 and SGL_RS08135 are separated by 318 nucleotidesSGL_RS08135 and SGL_RS08140 are separated by 90 nucleotidesSGL_RS08140 and SGL_RS08145 overlap by 1 nucleotides SGL_RS08130: SGL_RS08130 - Rieske 2Fe-2S domain-containing protein, at 1,335,571 to 1,336,980 _RS08130 SGL_RS08135: SGL_RS08135 - NAD(P)/FAD-dependent oxidoreductase, at 1,337,299 to 1,338,636 _RS08135 SGL_RS08140: SGL_RS08140 - hypothetical protein, at 1,338,727 to 1,339,155 _RS08140 SGL_RS08145: SGL_RS08145 - ribosomal protein S18-alanine N-acetyltransferase, at 1,339,155 to 1,339,631 _RS08145 Position (kb) 1337 1338 1339Strain fitness (log2 ratio) -1 0 1at 1336.375 kb on + strand, within SGL_RS08130at 1336.385 kb on + strand, within SGL_RS08130at 1336.901 kb on + strandat 1337.315 kb on - strandat 1337.360 kb on + strandat 1337.361 kb on + strandat 1337.458 kb on + strand, within SGL_RS08135at 1337.506 kb on + strand, within SGL_RS08135at 1337.599 kb on + strand, within SGL_RS08135at 1337.613 kb on - strand, within SGL_RS08135at 1338.034 kb on - strand, within SGL_RS08135at 1338.114 kb on - strand, within SGL_RS08135at 1338.124 kb on - strand, within SGL_RS08135at 1338.134 kb on - strand, within SGL_RS08135at 1338.161 kb on - strand, within SGL_RS08135at 1338.165 kb on - strand, within SGL_RS08135at 1338.165 kb on - strand, within SGL_RS08135at 1338.173 kb on + strand, within SGL_RS08135at 1338.267 kb on + strand, within SGL_RS08135at 1338.389 kb on + strand, within SGL_RS08135at 1338.416 kb on - strand, within SGL_RS08135at 1338.619 kb on + strandat 1338.762 kb on + strandat 1338.767 kb on - strandat 1338.835 kb on - strand, within SGL_RS08140at 1338.856 kb on - strand, within SGL_RS08140at 1338.863 kb on - strand, within SGL_RS08140at 1338.863 kb on - strand, within SGL_RS08140at 1338.870 kb on + strand, within SGL_RS08140at 1338.923 kb on - strand, within SGL_RS08140at 1338.933 kb on - strand, within SGL_RS08140at 1339.033 kb on - strand, within SGL_RS08140at 1339.201 kb on + strandat 1339.406 kb on - strand, within SGL_RS08145at 1339.453 kb on - strand, within SGL_RS08145at 1339.513 kb on - strand, within SGL_RS08145at 1339.591 kb on + strandat 1339.599 kb on - strandat 1339.621 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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1,336,375 + SGL_RS08130 0.57 -0.0
1,336,385 + SGL_RS08130 0.58 +0.1
1,336,901 + -0.3
1,337,315 - +0.2
1,337,360 + -0.4
1,337,361 + +0.7
1,337,458 + SGL_RS08135 0.12 +0.1
1,337,506 + SGL_RS08135 0.15 +0.3
1,337,599 + SGL_RS08135 0.22 +0.1
1,337,613 - SGL_RS08135 0.23 -0.0
1,338,034 - SGL_RS08135 0.55 +0.3
1,338,114 - SGL_RS08135 0.61 -0.8
1,338,124 - SGL_RS08135 0.62 -0.2
1,338,134 - SGL_RS08135 0.62 +0.5
1,338,161 - SGL_RS08135 0.64 +0.6
1,338,165 - SGL_RS08135 0.65 -0.1
1,338,165 - SGL_RS08135 0.65 +0.1
1,338,173 + SGL_RS08135 0.65 +0.4
1,338,267 + SGL_RS08135 0.72 -0.2
1,338,389 + SGL_RS08135 0.81 -0.7
1,338,416 - SGL_RS08135 0.83 -0.4
1,338,619 + -0.1
1,338,762 + +1.0
1,338,767 - +0.1
1,338,835 - SGL_RS08140 0.25 +0.5
1,338,856 - SGL_RS08140 0.30 +0.3
1,338,863 - SGL_RS08140 0.32 +0.4
1,338,863 - SGL_RS08140 0.32 +0.2
1,338,870 + SGL_RS08140 0.33 -0.3
1,338,923 - SGL_RS08140 0.46 +0.1
1,338,933 - SGL_RS08140 0.48 -0.1
1,339,033 - SGL_RS08140 0.71 -0.0
1,339,201 + +0.6
1,339,406 - SGL_RS08145 0.53 +0.8
1,339,453 - SGL_RS08145 0.62 +0.4
1,339,513 - SGL_RS08145 0.75 +0.1
1,339,591 + +0.4
1,339,599 - +0.2
1,339,621 + -0.3

Or see this region's nucleotide sequence