Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08115

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08105 and SGL_RS08110 are separated by 119 nucleotidesSGL_RS08110 and SGL_RS08115 are separated by 49 nucleotidesSGL_RS08115 and SGL_RS08120 are separated by 284 nucleotides SGL_RS08105: SGL_RS08105 - hypothetical protein, at 1,329,388 to 1,329,990 _RS08105 SGL_RS08110: SGL_RS08110 - type 1 glutamine amidotransferase, at 1,330,110 to 1,330,880 _RS08110 SGL_RS08115: SGL_RS08115 - NAD(P)/FAD-dependent oxidoreductase, at 1,330,930 to 1,332,144 _RS08115 SGL_RS08120: SGL_RS08120 - N-acetylmuramoyl-L-alanine amidase, at 1,332,429 to 1,334,378 _RS08120 Position (kb) 1330 1331 1332 1333Strain fitness (log2 ratio) -3 -2 -1 0 1at 1329.937 kb on - strandat 1329.958 kb on + strandat 1330.884 kb on + strandat 1330.926 kb on + strandat 1330.980 kb on + strandat 1331.010 kb on + strandat 1331.028 kb on - strandat 1331.029 kb on - strandat 1331.029 kb on - strandat 1331.212 kb on + strand, within SGL_RS08115at 1331.220 kb on - strand, within SGL_RS08115at 1331.237 kb on - strand, within SGL_RS08115at 1331.275 kb on - strand, within SGL_RS08115at 1331.285 kb on + strand, within SGL_RS08115at 1331.347 kb on - strand, within SGL_RS08115at 1331.505 kb on - strand, within SGL_RS08115at 1331.541 kb on - strand, within SGL_RS08115at 1331.661 kb on - strand, within SGL_RS08115at 1331.991 kb on - strand, within SGL_RS08115at 1332.208 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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1,329,937 - -0.0
1,329,958 + -0.5
1,330,884 + +0.5
1,330,926 + +0.1
1,330,980 + -0.4
1,331,010 + -1.5
1,331,028 - -1.1
1,331,029 - -2.9
1,331,029 - -1.7
1,331,212 + SGL_RS08115 0.23 -1.8
1,331,220 - SGL_RS08115 0.24 -1.3
1,331,237 - SGL_RS08115 0.25 -1.4
1,331,275 - SGL_RS08115 0.28 -2.1
1,331,285 + SGL_RS08115 0.29 -1.3
1,331,347 - SGL_RS08115 0.34 -3.1
1,331,505 - SGL_RS08115 0.47 -3.1
1,331,541 - SGL_RS08115 0.50 -0.9
1,331,661 - SGL_RS08115 0.60 -3.4
1,331,991 - SGL_RS08115 0.87 +0.2
1,332,208 + +0.9

Or see this region's nucleotide sequence