Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07770

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07765 and SGL_RS07770 are separated by 302 nucleotidesSGL_RS07770 and SGL_RS07775 are separated by 55 nucleotides SGL_RS07765: SGL_RS07765 - pitrilysin family protein, at 1,259,760 to 1,261,052 _RS07765 SGL_RS07770: SGL_RS07770 - HupE/UreJ family protein, at 1,261,355 to 1,261,993 _RS07770 SGL_RS07775: SGL_RS07775 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 1,262,049 to 1,263,260 _RS07775 Position (kb) 1261 1262Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 1260.361 kb on + strand, within SGL_RS07765at 1260.528 kb on + strand, within SGL_RS07765at 1260.536 kb on - strand, within SGL_RS07765at 1260.909 kb on - strand, within SGL_RS07765at 1260.921 kb on + strand, within SGL_RS07765at 1261.043 kb on - strandat 1261.056 kb on + strandat 1261.078 kb on - strandat 1261.177 kb on - strandat 1261.191 kb on - strandat 1261.256 kb on + strandat 1261.295 kb on + strandat 1261.323 kb on + strandat 1261.378 kb on - strandat 1261.631 kb on - strand, within SGL_RS07770at 1261.667 kb on - strand, within SGL_RS07770at 1261.757 kb on + strand, within SGL_RS07770at 1261.759 kb on + strand, within SGL_RS07770at 1261.874 kb on + strand, within SGL_RS07770at 1261.891 kb on + strand, within SGL_RS07770at 1261.914 kb on - strand, within SGL_RS07770at 1261.964 kb on + strandat 1261.972 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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1,260,361 + SGL_RS07765 0.46 -2.1
1,260,528 + SGL_RS07765 0.59 -2.0
1,260,536 - SGL_RS07765 0.60 -0.8
1,260,909 - SGL_RS07765 0.89 -1.7
1,260,921 + SGL_RS07765 0.90 -2.3
1,261,043 - -0.5
1,261,056 + -1.7
1,261,078 - -1.9
1,261,177 - -0.1
1,261,191 - +0.5
1,261,256 + -3.1
1,261,295 + -5.9
1,261,323 + -6.8
1,261,378 - -5.8
1,261,631 - SGL_RS07770 0.43 -6.8
1,261,667 - SGL_RS07770 0.49 -6.0
1,261,757 + SGL_RS07770 0.63 -5.9
1,261,759 + SGL_RS07770 0.63 -7.8
1,261,874 + SGL_RS07770 0.81 -5.1
1,261,891 + SGL_RS07770 0.84 -6.9
1,261,914 - SGL_RS07770 0.87 -7.5
1,261,964 + -6.7
1,261,972 - -4.2

Or see this region's nucleotide sequence