Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07760

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07755 and SGL_RS07760 are separated by 180 nucleotidesSGL_RS07760 and SGL_RS07765 are separated by 8 nucleotides SGL_RS07755: SGL_RS07755 - UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase, at 1,256,905 to 1,258,263 _RS07755 SGL_RS07760: SGL_RS07760 - pitrilysin family protein, at 1,258,444 to 1,259,751 _RS07760 SGL_RS07765: SGL_RS07765 - pitrilysin family protein, at 1,259,760 to 1,261,052 _RS07765 Position (kb) 1258 1259 1260Strain fitness (log2 ratio) -2 -1 0 1at 1258.615 kb on + strand, within SGL_RS07760at 1259.054 kb on - strand, within SGL_RS07760at 1259.103 kb on + strand, within SGL_RS07760at 1259.286 kb on + strand, within SGL_RS07760at 1259.310 kb on + strand, within SGL_RS07760at 1259.318 kb on - strand, within SGL_RS07760at 1259.494 kb on + strand, within SGL_RS07760at 1259.545 kb on + strand, within SGL_RS07760at 1259.545 kb on + strand, within SGL_RS07760at 1259.545 kb on + strand, within SGL_RS07760at 1259.545 kb on + strand, within SGL_RS07760at 1259.553 kb on - strand, within SGL_RS07760at 1259.595 kb on - strand, within SGL_RS07760at 1259.610 kb on + strand, within SGL_RS07760at 1259.695 kb on + strandat 1259.700 kb on + strandat 1259.747 kb on + strandat 1259.842 kb on + strandat 1259.959 kb on - strand, within SGL_RS07765at 1259.993 kb on + strand, within SGL_RS07765at 1260.000 kb on + strand, within SGL_RS07765at 1260.001 kb on - strand, within SGL_RS07765at 1260.361 kb on + strand, within SGL_RS07765at 1260.528 kb on + strand, within SGL_RS07765at 1260.536 kb on - strand, within SGL_RS07765

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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1,258,615 + SGL_RS07760 0.13 -1.4
1,259,054 - SGL_RS07760 0.47 -2.0
1,259,103 + SGL_RS07760 0.50 -1.6
1,259,286 + SGL_RS07760 0.64 -1.7
1,259,310 + SGL_RS07760 0.66 -1.1
1,259,318 - SGL_RS07760 0.67 -1.4
1,259,494 + SGL_RS07760 0.80 -1.6
1,259,545 + SGL_RS07760 0.84 -2.0
1,259,545 + SGL_RS07760 0.84 -2.1
1,259,545 + SGL_RS07760 0.84 -1.5
1,259,545 + SGL_RS07760 0.84 -1.2
1,259,553 - SGL_RS07760 0.85 +0.4
1,259,595 - SGL_RS07760 0.88 -2.1
1,259,610 + SGL_RS07760 0.89 -1.6
1,259,695 + -1.2
1,259,700 + -1.6
1,259,747 + +0.1
1,259,842 + -0.4
1,259,959 - SGL_RS07765 0.15 -2.1
1,259,993 + SGL_RS07765 0.18 -1.9
1,260,000 + SGL_RS07765 0.19 -2.3
1,260,001 - SGL_RS07765 0.19 -1.4
1,260,361 + SGL_RS07765 0.46 -2.1
1,260,528 + SGL_RS07765 0.59 -2.0
1,260,536 - SGL_RS07765 0.60 -0.8

Or see this region's nucleotide sequence