Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07600

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07590 and SGL_RS07595 are separated by 27 nucleotidesSGL_RS07595 and SGL_RS07600 are separated by 304 nucleotidesSGL_RS07600 and SGL_RS07605 are separated by 52 nucleotidesSGL_RS07605 and SGL_RS07610 are separated by 32 nucleotides SGL_RS07590: SGL_RS07590 - hydrogenase maturation protease, at 1,227,090 to 1,227,563 _RS07590 SGL_RS07595: SGL_RS07595 - 30S ribosomal protein S6, at 1,227,591 to 1,227,932 _RS07595 SGL_RS07600: SGL_RS07600 - fumarylacetoacetate hydrolase family protein, at 1,228,237 to 1,229,067 _RS07600 SGL_RS07605: SGL_RS07605 - HEAT repeat domain-containing protein, at 1,229,120 to 1,229,938 _RS07605 SGL_RS07610: SGL_RS07610 - cyclophane-forming radical SAM/SPASM peptide maturase GrrM/OscB, at 1,229,971 to 1,231,167 _RS07610 Position (kb) 1228 1229 1230Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1227.240 kb on + strand, within SGL_RS07590at 1227.243 kb on - strand, within SGL_RS07590at 1227.261 kb on + strand, within SGL_RS07590at 1227.320 kb on + strand, within SGL_RS07590at 1227.407 kb on - strand, within SGL_RS07590at 1227.434 kb on + strand, within SGL_RS07590at 1227.450 kb on + strand, within SGL_RS07590at 1227.509 kb on + strand, within SGL_RS07590at 1228.134 kb on - strandat 1228.271 kb on - strandat 1228.281 kb on + strandat 1228.359 kb on - strand, within SGL_RS07600at 1228.366 kb on - strand, within SGL_RS07600at 1228.649 kb on - strand, within SGL_RS07600at 1228.876 kb on + strand, within SGL_RS07600at 1228.883 kb on + strand, within SGL_RS07600at 1228.925 kb on + strand, within SGL_RS07600at 1229.017 kb on + strandat 1229.017 kb on + strandat 1229.380 kb on + strand, within SGL_RS07605at 1229.397 kb on + strand, within SGL_RS07605at 1229.577 kb on + strand, within SGL_RS07605at 1229.602 kb on - strand, within SGL_RS07605at 1229.705 kb on + strand, within SGL_RS07605at 1229.780 kb on + strand, within SGL_RS07605

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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1,227,240 + SGL_RS07590 0.32 +0.4
1,227,243 - SGL_RS07590 0.32 -0.3
1,227,261 + SGL_RS07590 0.36 +0.4
1,227,320 + SGL_RS07590 0.49 -0.6
1,227,407 - SGL_RS07590 0.67 +0.2
1,227,434 + SGL_RS07590 0.73 -0.3
1,227,450 + SGL_RS07590 0.76 -0.5
1,227,509 + SGL_RS07590 0.88 +0.1
1,228,134 - -3.4
1,228,271 - -4.5
1,228,281 + -7.5
1,228,359 - SGL_RS07600 0.15 -6.9
1,228,366 - SGL_RS07600 0.16 -5.2
1,228,649 - SGL_RS07600 0.50 -5.0
1,228,876 + SGL_RS07600 0.77 -4.9
1,228,883 + SGL_RS07600 0.78 -5.0
1,228,925 + SGL_RS07600 0.83 -5.7
1,229,017 + -5.2
1,229,017 + -4.5
1,229,380 + SGL_RS07605 0.32 -3.8
1,229,397 + SGL_RS07605 0.34 -4.3
1,229,577 + SGL_RS07605 0.56 -3.1
1,229,602 - SGL_RS07605 0.59 -3.1
1,229,705 + SGL_RS07605 0.71 -3.6
1,229,780 + SGL_RS07605 0.81 -2.3

Or see this region's nucleotide sequence