Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07580

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07575 and SGL_RS07580 are separated by 86 nucleotidesSGL_RS07580 and SGL_RS07585 are separated by 119 nucleotidesSGL_RS07585 and SGL_RS07590 are separated by 107 nucleotides SGL_RS07575: SGL_RS07575 - D-alanine--D-alanine ligase family protein, at 1,224,777 to 1,225,841 _RS07575 SGL_RS07580: SGL_RS07580 - exopolysaccharide biosynthesis protein, at 1,225,928 to 1,226,566 _RS07580 SGL_RS07585: SGL_RS07585 - ATP-dependent Clp protease adapter ClpS, at 1,226,686 to 1,226,982 _RS07585 SGL_RS07590: SGL_RS07590 - hydrogenase maturation protease, at 1,227,090 to 1,227,563 _RS07590 Position (kb) 1225 1226 1227Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1226.003 kb on + strand, within SGL_RS07580at 1226.204 kb on + strand, within SGL_RS07580at 1226.204 kb on + strand, within SGL_RS07580at 1226.233 kb on - strand, within SGL_RS07580at 1226.233 kb on - strand, within SGL_RS07580at 1226.252 kb on - strand, within SGL_RS07580at 1226.313 kb on + strand, within SGL_RS07580at 1226.568 kb on + strandat 1226.807 kb on + strand, within SGL_RS07585at 1226.860 kb on + strand, within SGL_RS07585at 1226.932 kb on - strand, within SGL_RS07585at 1226.944 kb on - strand, within SGL_RS07585at 1226.977 kb on + strandat 1226.999 kb on + strandat 1227.141 kb on - strand, within SGL_RS07590at 1227.170 kb on - strand, within SGL_RS07590at 1227.240 kb on + strand, within SGL_RS07590at 1227.243 kb on - strand, within SGL_RS07590at 1227.261 kb on + strand, within SGL_RS07590at 1227.320 kb on + strand, within SGL_RS07590at 1227.407 kb on - strand, within SGL_RS07590at 1227.434 kb on + strand, within SGL_RS07590at 1227.450 kb on + strand, within SGL_RS07590at 1227.509 kb on + strand, within SGL_RS07590

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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1,226,003 + SGL_RS07580 0.12 -5.3
1,226,204 + SGL_RS07580 0.43 -7.7
1,226,204 + SGL_RS07580 0.43 -4.2
1,226,233 - SGL_RS07580 0.48 -6.1
1,226,233 - SGL_RS07580 0.48 -7.1
1,226,252 - SGL_RS07580 0.51 -4.8
1,226,313 + SGL_RS07580 0.60 -4.4
1,226,568 + -0.5
1,226,807 + SGL_RS07585 0.41 -0.2
1,226,860 + SGL_RS07585 0.59 +0.5
1,226,932 - SGL_RS07585 0.83 -0.0
1,226,944 - SGL_RS07585 0.87 -0.2
1,226,977 + +0.2
1,226,999 + -0.1
1,227,141 - SGL_RS07590 0.11 +0.2
1,227,170 - SGL_RS07590 0.17 -0.5
1,227,240 + SGL_RS07590 0.32 +0.4
1,227,243 - SGL_RS07590 0.32 -0.3
1,227,261 + SGL_RS07590 0.36 +0.4
1,227,320 + SGL_RS07590 0.49 -0.6
1,227,407 - SGL_RS07590 0.67 +0.2
1,227,434 + SGL_RS07590 0.73 -0.3
1,227,450 + SGL_RS07590 0.76 -0.5
1,227,509 + SGL_RS07590 0.88 +0.1

Or see this region's nucleotide sequence