Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06980

Experiment: D-Sorbitol 500 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS06970 and SGL_RS06975 are separated by 30 nucleotidesSGL_RS06975 and SGL_RS06980 are separated by 35 nucleotidesSGL_RS06980 and SGL_RS06985 are separated by 153 nucleotidesSGL_RS06985 and SGL_RS06990 are separated by 104 nucleotides SGL_RS06970: SGL_RS06970 - pentapeptide repeat-containing protein, at 1,091,698 to 1,092,894 _RS06970 SGL_RS06975: SGL_RS06975 - HAD-IA family hydrolase, at 1,092,925 to 1,093,590 _RS06975 SGL_RS06980: SGL_RS06980 - tRNA epoxyqueuosine(34) reductase QueG, at 1,093,626 to 1,094,495 _RS06980 SGL_RS06985: SGL_RS06985 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,094,649 to 1,095,143 _RS06985 SGL_RS06990: SGL_RS06990 - photosystem II reaction center protein PsbZ, at 1,095,248 to 1,095,436 _RS06990 Position (kb) 1093 1094 1095Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1092.632 kb on - strand, within SGL_RS06970at 1092.755 kb on - strand, within SGL_RS06970at 1092.779 kb on - strandat 1092.789 kb on - strandat 1092.800 kb on - strandat 1092.802 kb on + strandat 1092.903 kb on - strandat 1092.924 kb on - strandat 1092.991 kb on - strandat 1093.444 kb on + strand, within SGL_RS06975at 1093.674 kb on - strandat 1093.706 kb on - strandat 1093.804 kb on - strand, within SGL_RS06980at 1093.982 kb on - strand, within SGL_RS06980at 1094.033 kb on - strand, within SGL_RS06980at 1094.132 kb on - strand, within SGL_RS06980at 1094.294 kb on + strand, within SGL_RS06980at 1094.326 kb on + strand, within SGL_RS06980at 1094.445 kb on + strandat 1094.627 kb on + strandat 1094.645 kb on + strandat 1094.668 kb on + strandat 1094.800 kb on + strand, within SGL_RS06985at 1095.202 kb on - strandat 1095.204 kb on + strandat 1095.212 kb on - strandat 1095.263 kb on + strandat 1095.349 kb on - strand, within SGL_RS06990at 1095.444 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
remove
1,092,632 - SGL_RS06970 0.78 -0.2
1,092,755 - SGL_RS06970 0.88 -0.2
1,092,779 - -0.2
1,092,789 - -0.5
1,092,800 - -0.1
1,092,802 + -0.4
1,092,903 - +0.3
1,092,924 - +0.0
1,092,991 - -1.0
1,093,444 + SGL_RS06975 0.78 -1.8
1,093,674 - -1.6
1,093,706 - -3.0
1,093,804 - SGL_RS06980 0.20 -1.3
1,093,982 - SGL_RS06980 0.41 -1.8
1,094,033 - SGL_RS06980 0.47 -1.6
1,094,132 - SGL_RS06980 0.58 -1.4
1,094,294 + SGL_RS06980 0.77 -1.7
1,094,326 + SGL_RS06980 0.80 -3.0
1,094,445 + -1.9
1,094,627 + -1.0
1,094,645 + -1.2
1,094,668 + -3.2
1,094,800 + SGL_RS06985 0.31 -3.4
1,095,202 - -4.8
1,095,204 + -3.2
1,095,212 - -1.4
1,095,263 + -2.0
1,095,349 - SGL_RS06990 0.53 -1.6
1,095,444 - -1.6

Or see this region's nucleotide sequence