Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05500

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS05490 and SGL_RS05495 are separated by 208 nucleotidesSGL_RS05495 and SGL_RS05500 are separated by 128 nucleotidesSGL_RS05500 and SGL_RS05505 are separated by 681 nucleotides SGL_RS05490: SGL_RS05490 - hypothetical protein, at 776,058 to 776,342 _RS05490 SGL_RS05495: SGL_RS05495 - hypothetical protein, at 776,551 to 776,937 _RS05495 SGL_RS05500: SGL_RS05500 - ribonuclease R, at 777,066 to 779,411 _RS05500 SGL_RS05505: SGL_RS05505 - TIGR03279 family radical SAM protein, at 780,093 to 781,448 _RS05505 Position (kb) 777 778 779 780Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 776.152 kb on + strand, within SGL_RS05490at 776.285 kb on + strand, within SGL_RS05490at 776.628 kb on + strand, within SGL_RS05495at 776.628 kb on + strand, within SGL_RS05495at 776.628 kb on + strand, within SGL_RS05495at 776.636 kb on - strand, within SGL_RS05495at 776.641 kb on - strand, within SGL_RS05495at 776.736 kb on - strand, within SGL_RS05495at 776.797 kb on + strand, within SGL_RS05495at 777.055 kb on + strandat 777.247 kb on - strandat 777.366 kb on + strand, within SGL_RS05500at 777.381 kb on - strand, within SGL_RS05500at 777.682 kb on + strand, within SGL_RS05500at 777.688 kb on - strand, within SGL_RS05500at 777.688 kb on - strand, within SGL_RS05500at 777.699 kb on - strand, within SGL_RS05500at 777.707 kb on + strand, within SGL_RS05500at 777.745 kb on - strand, within SGL_RS05500at 777.845 kb on - strand, within SGL_RS05500at 778.012 kb on + strand, within SGL_RS05500at 778.012 kb on + strand, within SGL_RS05500at 778.238 kb on - strand, within SGL_RS05500at 778.321 kb on + strand, within SGL_RS05500at 778.321 kb on + strand, within SGL_RS05500at 778.328 kb on + strand, within SGL_RS05500at 778.329 kb on - strand, within SGL_RS05500at 778.418 kb on + strand, within SGL_RS05500at 778.420 kb on + strand, within SGL_RS05500at 778.598 kb on + strand, within SGL_RS05500at 778.744 kb on - strand, within SGL_RS05500at 778.853 kb on - strand, within SGL_RS05500at 778.866 kb on - strand, within SGL_RS05500at 778.908 kb on + strand, within SGL_RS05500at 778.916 kb on + strand, within SGL_RS05500at 779.031 kb on + strand, within SGL_RS05500at 779.079 kb on - strand, within SGL_RS05500at 779.216 kb on + strandat 779.229 kb on - strandat 779.295 kb on + strandat 779.313 kb on - strandat 779.487 kb on - strandat 779.516 kb on + strandat 779.665 kb on + strandat 779.730 kb on + strandat 779.730 kb on + strandat 779.730 kb on + strandat 779.730 kb on + strandat 779.738 kb on - strandat 779.738 kb on - strandat 779.738 kb on - strandat 779.738 kb on - strandat 779.738 kb on - strandat 779.836 kb on + strandat 779.893 kb on - strandat 779.898 kb on - strandat 779.902 kb on + strandat 779.957 kb on + strandat 779.987 kb on - strandat 780.046 kb on + strandat 780.064 kb on - strandat 780.069 kb on - strandat 780.084 kb on - strandat 780.168 kb on + strandat 780.203 kb on + strandat 780.207 kb on - strandat 780.274 kb on - strand, within SGL_RS05505at 780.282 kb on - strand, within SGL_RS05505at 780.328 kb on - strand, within SGL_RS05505at 780.345 kb on + strand, within SGL_RS05505at 780.345 kb on + strand, within SGL_RS05505at 780.353 kb on - strand, within SGL_RS05505

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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776,152 + SGL_RS05490 0.33 -0.5
776,285 + SGL_RS05490 0.80 +0.4
776,628 + SGL_RS05495 0.20 -0.3
776,628 + SGL_RS05495 0.20 -0.1
776,628 + SGL_RS05495 0.20 -0.2
776,636 - SGL_RS05495 0.22 +0.3
776,641 - SGL_RS05495 0.23 +0.2
776,736 - SGL_RS05495 0.48 -0.1
776,797 + SGL_RS05495 0.64 -0.2
777,055 + +0.2
777,247 - -1.6
777,366 + SGL_RS05500 0.13 -5.6
777,381 - SGL_RS05500 0.13 -7.1
777,682 + SGL_RS05500 0.26 -6.1
777,688 - SGL_RS05500 0.27 -4.8
777,688 - SGL_RS05500 0.27 -6.0
777,699 - SGL_RS05500 0.27 -3.4
777,707 + SGL_RS05500 0.27 -5.7
777,745 - SGL_RS05500 0.29 -4.0
777,845 - SGL_RS05500 0.33 -5.1
778,012 + SGL_RS05500 0.40 -5.6
778,012 + SGL_RS05500 0.40 -4.1
778,238 - SGL_RS05500 0.50 -5.8
778,321 + SGL_RS05500 0.53 -2.7
778,321 + SGL_RS05500 0.53 -5.6
778,328 + SGL_RS05500 0.54 -3.8
778,329 - SGL_RS05500 0.54 -4.5
778,418 + SGL_RS05500 0.58 -6.8
778,420 + SGL_RS05500 0.58 -5.6
778,598 + SGL_RS05500 0.65 -4.6
778,744 - SGL_RS05500 0.72 -4.3
778,853 - SGL_RS05500 0.76 -4.9
778,866 - SGL_RS05500 0.77 -3.6
778,908 + SGL_RS05500 0.79 -4.1
778,916 + SGL_RS05500 0.79 -5.6
779,031 + SGL_RS05500 0.84 -3.5
779,079 - SGL_RS05500 0.86 -3.1
779,216 + -3.3
779,229 - -4.5
779,295 + -3.2
779,313 - -4.6
779,487 - -4.1
779,516 + -6.3
779,665 + -2.8
779,730 + +0.3
779,730 + +0.6
779,730 + +0.3
779,730 + +0.3
779,738 - +0.3
779,738 - +0.2
779,738 - -0.1
779,738 - -0.4
779,738 - +0.3
779,836 + +0.3
779,893 - +0.4
779,898 - +0.2
779,902 + -0.1
779,957 + +0.7
779,987 - -0.4
780,046 + +0.6
780,064 - +0.7
780,069 - +0.0
780,084 - +0.2
780,168 + -0.2
780,203 + -0.6
780,207 - +0.0
780,274 - SGL_RS05505 0.13 -0.2
780,282 - SGL_RS05505 0.14 +0.4
780,328 - SGL_RS05505 0.17 -0.5
780,345 + SGL_RS05505 0.19 -0.4
780,345 + SGL_RS05505 0.19 -0.3
780,353 - SGL_RS05505 0.19 -0.0

Or see this region's nucleotide sequence