Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04355

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04345 and SGL_RS04350 overlap by 4 nucleotidesSGL_RS04350 and SGL_RS04355 overlap by 4 nucleotidesSGL_RS04355 and SGL_RS04360 are separated by 267 nucleotidesSGL_RS04360 and SGL_RS04365 are separated by 156 nucleotides SGL_RS04345: SGL_RS04345 - response regulator, at 533,113 to 537,474 _RS04345 SGL_RS04350: SGL_RS04350 - PleD family two-component system response regulator, at 537,471 to 538,418 _RS04350 SGL_RS04355: SGL_RS04355 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 538,415 to 539,020 _RS04355 SGL_RS04360: SGL_RS04360 - 5-formyltetrahydrofolate cyclo-ligase, at 539,288 to 539,854 _RS04360 SGL_RS04365: SGL_RS04365 - HAD family hydrolase, at 540,011 to 540,763 _RS04365 Position (kb) 538 539 540Strain fitness (log2 ratio) -3 -2 -1 0 1at 537.418 kb on + strandat 537.444 kb on - strandat 537.455 kb on + strandat 537.458 kb on + strandat 537.487 kb on - strandat 537.588 kb on - strand, within SGL_RS04350at 538.058 kb on + strand, within SGL_RS04350at 538.087 kb on + strand, within SGL_RS04350at 538.107 kb on + strand, within SGL_RS04350at 538.119 kb on + strand, within SGL_RS04350at 538.120 kb on - strand, within SGL_RS04350at 538.211 kb on - strand, within SGL_RS04350at 538.233 kb on + strand, within SGL_RS04350at 538.249 kb on + strand, within SGL_RS04350at 538.383 kb on + strandat 538.383 kb on + strandat 538.391 kb on - strandat 538.391 kb on - strandat 538.436 kb on - strandat 538.443 kb on + strandat 538.448 kb on + strandat 538.456 kb on - strandat 538.507 kb on - strand, within SGL_RS04355at 538.587 kb on - strand, within SGL_RS04355at 538.608 kb on - strand, within SGL_RS04355at 538.776 kb on - strand, within SGL_RS04355at 538.781 kb on - strand, within SGL_RS04355at 538.802 kb on - strand, within SGL_RS04355at 538.869 kb on - strand, within SGL_RS04355at 538.890 kb on + strand, within SGL_RS04355at 538.961 kb on + strandat 538.970 kb on - strandat 539.061 kb on - strandat 539.120 kb on - strandat 539.215 kb on + strandat 539.348 kb on - strand, within SGL_RS04360at 539.545 kb on + strand, within SGL_RS04360at 539.557 kb on + strand, within SGL_RS04360at 539.570 kb on + strand, within SGL_RS04360at 539.587 kb on - strand, within SGL_RS04360at 539.601 kb on + strand, within SGL_RS04360at 539.706 kb on - strand, within SGL_RS04360at 539.884 kb on + strandat 539.890 kb on - strandat 539.892 kb on - strandat 539.894 kb on + strandat 539.894 kb on + strandat 539.932 kb on + strandat 539.981 kb on - strandat 539.983 kb on - strandat 539.983 kb on - strandat 539.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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537,418 + -0.4
537,444 - -0.9
537,455 + +0.5
537,458 + -0.0
537,487 - -0.1
537,588 - SGL_RS04350 0.12 -0.3
538,058 + SGL_RS04350 0.62 +0.4
538,087 + SGL_RS04350 0.65 -0.5
538,107 + SGL_RS04350 0.67 +0.1
538,119 + SGL_RS04350 0.68 +0.2
538,120 - SGL_RS04350 0.68 -0.2
538,211 - SGL_RS04350 0.78 -0.0
538,233 + SGL_RS04350 0.80 +0.0
538,249 + SGL_RS04350 0.82 -0.1
538,383 + -0.4
538,383 + -0.2
538,391 - +0.1
538,391 - -0.0
538,436 - +0.1
538,443 + -1.0
538,448 + -0.7
538,456 - -0.7
538,507 - SGL_RS04355 0.15 -1.3
538,587 - SGL_RS04355 0.28 -1.8
538,608 - SGL_RS04355 0.32 -0.1
538,776 - SGL_RS04355 0.60 -1.7
538,781 - SGL_RS04355 0.60 -1.2
538,802 - SGL_RS04355 0.64 -2.3
538,869 - SGL_RS04355 0.75 -2.2
538,890 + SGL_RS04355 0.78 -2.4
538,961 + -1.3
538,970 - -1.2
539,061 - -1.6
539,120 - -2.1
539,215 + -2.2
539,348 - SGL_RS04360 0.11 -2.4
539,545 + SGL_RS04360 0.45 -1.8
539,557 + SGL_RS04360 0.47 -1.7
539,570 + SGL_RS04360 0.50 -1.2
539,587 - SGL_RS04360 0.53 -1.6
539,601 + SGL_RS04360 0.55 -1.8
539,706 - SGL_RS04360 0.74 -2.8
539,884 + +0.9
539,890 - -1.1
539,892 - -0.3
539,894 + +0.4
539,894 + +1.4
539,932 + -0.8
539,981 - -0.6
539,983 - -0.1
539,983 - -0.1
539,993 - -0.9

Or see this region's nucleotide sequence