Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02335

Experiment: D-Sorbitol 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02330 and SGL_RS02335 overlap by 36 nucleotidesSGL_RS02335 and SGL_RS02340 are separated by 20 nucleotides SGL_RS02330: SGL_RS02330 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 107,471 to 108,325 _RS02330 SGL_RS02335: SGL_RS02335 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 108,290 to 109,201 _RS02335 SGL_RS02340: SGL_RS02340 - hypothetical protein, at 109,222 to 110,313 _RS02340 Position (kb) 108 109 110Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 107.328 kb on + strandat 107.550 kb on + strandat 107.558 kb on - strand, within SGL_RS02330at 107.711 kb on - strand, within SGL_RS02330at 107.782 kb on + strand, within SGL_RS02330at 107.822 kb on + strand, within SGL_RS02330at 107.855 kb on - strand, within SGL_RS02330at 107.933 kb on - strand, within SGL_RS02330at 108.158 kb on - strand, within SGL_RS02330at 108.542 kb on + strand, within SGL_RS02335at 108.544 kb on - strand, within SGL_RS02335at 108.591 kb on + strand, within SGL_RS02335at 108.599 kb on - strand, within SGL_RS02335at 108.599 kb on - strand, within SGL_RS02335at 108.599 kb on - strand, within SGL_RS02335at 108.654 kb on + strand, within SGL_RS02335at 108.655 kb on - strand, within SGL_RS02335at 108.672 kb on - strand, within SGL_RS02335at 108.780 kb on - strand, within SGL_RS02335at 108.965 kb on + strand, within SGL_RS02335at 108.973 kb on - strand, within SGL_RS02335at 108.973 kb on - strand, within SGL_RS02335at 108.973 kb on - strand, within SGL_RS02335at 108.978 kb on - strand, within SGL_RS02335at 108.978 kb on - strand, within SGL_RS02335at 108.983 kb on - strand, within SGL_RS02335at 109.001 kb on - strand, within SGL_RS02335at 109.043 kb on + strand, within SGL_RS02335at 109.051 kb on - strand, within SGL_RS02335at 109.061 kb on + strand, within SGL_RS02335at 109.144 kb on + strandat 109.253 kb on + strandat 109.278 kb on + strandat 109.280 kb on + strandat 109.479 kb on - strand, within SGL_RS02340at 109.479 kb on - strand, within SGL_RS02340at 109.497 kb on + strand, within SGL_RS02340at 109.505 kb on - strand, within SGL_RS02340at 109.505 kb on - strand, within SGL_RS02340at 109.550 kb on - strand, within SGL_RS02340at 109.608 kb on + strand, within SGL_RS02340at 109.608 kb on + strand, within SGL_RS02340at 109.608 kb on + strand, within SGL_RS02340at 109.608 kb on + strand, within SGL_RS02340at 109.608 kb on + strand, within SGL_RS02340at 109.608 kb on + strand, within SGL_RS02340at 109.616 kb on - strand, within SGL_RS02340at 109.616 kb on - strand, within SGL_RS02340at 109.616 kb on - strand, within SGL_RS02340at 109.966 kb on - strand, within SGL_RS02340at 110.044 kb on + strand, within SGL_RS02340at 110.052 kb on - strand, within SGL_RS02340at 110.064 kb on - strand, within SGL_RS02340at 110.069 kb on - strand, within SGL_RS02340at 110.157 kb on + strand, within SGL_RS02340at 110.165 kb on - strand, within SGL_RS02340

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol 500 mM
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107,328 + +0.0
107,550 + -6.5
107,558 - SGL_RS02330 0.10 -5.7
107,711 - SGL_RS02330 0.28 -7.2
107,782 + SGL_RS02330 0.36 -5.3
107,822 + SGL_RS02330 0.41 -3.1
107,855 - SGL_RS02330 0.45 -5.4
107,933 - SGL_RS02330 0.54 -5.2
108,158 - SGL_RS02330 0.80 -4.1
108,542 + SGL_RS02335 0.28 -0.5
108,544 - SGL_RS02335 0.28 -0.7
108,591 + SGL_RS02335 0.33 -1.1
108,599 - SGL_RS02335 0.34 -1.0
108,599 - SGL_RS02335 0.34 -1.4
108,599 - SGL_RS02335 0.34 -1.8
108,654 + SGL_RS02335 0.40 -1.1
108,655 - SGL_RS02335 0.40 -0.8
108,672 - SGL_RS02335 0.42 -0.3
108,780 - SGL_RS02335 0.54 -1.5
108,965 + SGL_RS02335 0.74 -0.6
108,973 - SGL_RS02335 0.75 +0.5
108,973 - SGL_RS02335 0.75 -1.4
108,973 - SGL_RS02335 0.75 -1.1
108,978 - SGL_RS02335 0.75 -0.7
108,978 - SGL_RS02335 0.75 -0.7
108,983 - SGL_RS02335 0.76 -0.1
109,001 - SGL_RS02335 0.78 -0.2
109,043 + SGL_RS02335 0.83 -1.0
109,051 - SGL_RS02335 0.83 -0.8
109,061 + SGL_RS02335 0.85 -0.7
109,144 + -1.5
109,253 + +0.1
109,278 + +0.4
109,280 + -0.0
109,479 - SGL_RS02340 0.24 +0.4
109,479 - SGL_RS02340 0.24 -0.3
109,497 + SGL_RS02340 0.25 +0.2
109,505 - SGL_RS02340 0.26 +0.1
109,505 - SGL_RS02340 0.26 +0.6
109,550 - SGL_RS02340 0.30 +0.1
109,608 + SGL_RS02340 0.35 -0.5
109,608 + SGL_RS02340 0.35 -0.0
109,608 + SGL_RS02340 0.35 +0.2
109,608 + SGL_RS02340 0.35 +0.2
109,608 + SGL_RS02340 0.35 -0.7
109,608 + SGL_RS02340 0.35 -0.1
109,616 - SGL_RS02340 0.36 +1.3
109,616 - SGL_RS02340 0.36 +0.2
109,616 - SGL_RS02340 0.36 -0.0
109,966 - SGL_RS02340 0.68 -0.1
110,044 + SGL_RS02340 0.75 -0.1
110,052 - SGL_RS02340 0.76 +0.1
110,064 - SGL_RS02340 0.77 -0.5
110,069 - SGL_RS02340 0.78 -0.1
110,157 + SGL_RS02340 0.86 -0.3
110,165 - SGL_RS02340 0.86 +0.3

Or see this region's nucleotide sequence