Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17630

Experiment: Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17625 and SGL_RS17630 are separated by 38 nucleotidesSGL_RS17630 and SGL_RS17635 are separated by 137 nucleotides SGL_RS17625: SGL_RS17625 - EAL domain-containing protein, at 3,408,051 to 3,409,316 _RS17625 SGL_RS17630: SGL_RS17630 - glucosylglycerol 3-phosphatase, at 3,409,355 to 3,410,623 _RS17630 SGL_RS17635: SGL_RS17635 - ABC transporter ATP-binding protein, at 3,410,761 to 3,411,852 _RS17635 Position (kb) 3409 3410 3411Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 3408.457 kb on - strand, within SGL_RS17625at 3408.738 kb on - strand, within SGL_RS17625at 3408.967 kb on - strand, within SGL_RS17625at 3408.979 kb on - strand, within SGL_RS17625at 3409.038 kb on + strand, within SGL_RS17625at 3409.039 kb on + strand, within SGL_RS17625at 3409.039 kb on + strand, within SGL_RS17625at 3409.067 kb on - strand, within SGL_RS17625at 3409.081 kb on - strand, within SGL_RS17625at 3409.159 kb on - strand, within SGL_RS17625at 3409.415 kb on - strandat 3409.471 kb on - strandat 3409.580 kb on + strand, within SGL_RS17630at 3409.642 kb on - strand, within SGL_RS17630at 3409.643 kb on - strand, within SGL_RS17630at 3409.643 kb on - strand, within SGL_RS17630at 3409.650 kb on + strand, within SGL_RS17630at 3409.657 kb on + strand, within SGL_RS17630at 3409.710 kb on - strand, within SGL_RS17630at 3409.846 kb on - strand, within SGL_RS17630at 3410.064 kb on - strand, within SGL_RS17630at 3410.077 kb on - strand, within SGL_RS17630at 3410.155 kb on + strand, within SGL_RS17630at 3410.165 kb on + strand, within SGL_RS17630at 3410.169 kb on + strand, within SGL_RS17630at 3410.266 kb on - strand, within SGL_RS17630at 3410.317 kb on - strand, within SGL_RS17630at 3410.411 kb on + strand, within SGL_RS17630at 3410.497 kb on + strandat 3410.507 kb on + strandat 3410.512 kb on + strandat 3410.556 kb on + strandat 3410.698 kb on + strandat 3410.980 kb on + strand, within SGL_RS17635at 3411.008 kb on + strand, within SGL_RS17635at 3411.118 kb on - strand, within SGL_RS17635at 3411.187 kb on + strand, within SGL_RS17635at 3411.207 kb on - strand, within SGL_RS17635at 3411.295 kb on + strand, within SGL_RS17635at 3411.295 kb on + strand, within SGL_RS17635at 3411.339 kb on - strand, within SGL_RS17635at 3411.408 kb on - strand, within SGL_RS17635at 3411.410 kb on - strand, within SGL_RS17635at 3411.536 kb on + strand, within SGL_RS17635at 3411.560 kb on + strand, within SGL_RS17635

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 800 mM
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3,408,457 - SGL_RS17625 0.32 +0.1
3,408,738 - SGL_RS17625 0.54 -0.1
3,408,967 - SGL_RS17625 0.72 +0.3
3,408,979 - SGL_RS17625 0.73 +0.5
3,409,038 + SGL_RS17625 0.78 -1.0
3,409,039 + SGL_RS17625 0.78 +0.0
3,409,039 + SGL_RS17625 0.78 +0.6
3,409,067 - SGL_RS17625 0.80 -0.3
3,409,081 - SGL_RS17625 0.81 -0.5
3,409,159 - SGL_RS17625 0.88 -0.1
3,409,415 - -7.4
3,409,471 - -7.6
3,409,580 + SGL_RS17630 0.18 -6.6
3,409,642 - SGL_RS17630 0.23 -6.7
3,409,643 - SGL_RS17630 0.23 -7.4
3,409,643 - SGL_RS17630 0.23 -3.6
3,409,650 + SGL_RS17630 0.23 -4.8
3,409,657 + SGL_RS17630 0.24 -6.2
3,409,710 - SGL_RS17630 0.28 -5.9
3,409,846 - SGL_RS17630 0.39 -6.5
3,410,064 - SGL_RS17630 0.56 -7.6
3,410,077 - SGL_RS17630 0.57 -5.2
3,410,155 + SGL_RS17630 0.63 -6.3
3,410,165 + SGL_RS17630 0.64 -6.9
3,410,169 + SGL_RS17630 0.64 -6.4
3,410,266 - SGL_RS17630 0.72 -5.2
3,410,317 - SGL_RS17630 0.76 -4.7
3,410,411 + SGL_RS17630 0.83 -7.7
3,410,497 + -6.9
3,410,507 + -5.0
3,410,512 + -5.4
3,410,556 + -5.3
3,410,698 + -0.5
3,410,980 + SGL_RS17635 0.20 -0.2
3,411,008 + SGL_RS17635 0.23 +0.1
3,411,118 - SGL_RS17635 0.33 +0.8
3,411,187 + SGL_RS17635 0.39 -0.0
3,411,207 - SGL_RS17635 0.41 -0.1
3,411,295 + SGL_RS17635 0.49 +0.0
3,411,295 + SGL_RS17635 0.49 +0.0
3,411,339 - SGL_RS17635 0.53 -0.3
3,411,408 - SGL_RS17635 0.59 +0.4
3,411,410 - SGL_RS17635 0.59 +0.0
3,411,536 + SGL_RS17635 0.71 +0.4
3,411,560 + SGL_RS17635 0.73 -0.1

Or see this region's nucleotide sequence