Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16465

Experiment: Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16460 and SGL_RS16465 are separated by 135 nucleotidesSGL_RS16465 and SGL_RS16470 are separated by 124 nucleotidesSGL_RS16470 and SGL_RS16475 are separated by 31 nucleotides SGL_RS16460: SGL_RS16460 - HAD-IIB family hydrolase, at 3,140,713 to 3,142,875 _RS16460 SGL_RS16465: SGL_RS16465 - hypothetical protein, at 3,143,011 to 3,143,571 _RS16465 SGL_RS16470: SGL_RS16470 - CheW domain-containing protein, at 3,143,696 to 3,144,181 _RS16470 SGL_RS16475: SGL_RS16475 - Hpt domain-containing protein, at 3,144,213 to 3,148,421 _RS16475 Position (kb) 3143 3144Strain fitness (log2 ratio) -1 0 1at 3142.048 kb on + strand, within SGL_RS16460at 3142.056 kb on - strand, within SGL_RS16460at 3142.056 kb on - strand, within SGL_RS16460at 3142.107 kb on + strand, within SGL_RS16460at 3142.179 kb on - strand, within SGL_RS16460at 3142.216 kb on - strand, within SGL_RS16460at 3142.299 kb on - strand, within SGL_RS16460at 3142.319 kb on - strand, within SGL_RS16460at 3142.331 kb on + strand, within SGL_RS16460at 3142.376 kb on + strand, within SGL_RS16460at 3142.384 kb on - strand, within SGL_RS16460at 3142.385 kb on + strand, within SGL_RS16460at 3142.395 kb on + strand, within SGL_RS16460at 3142.438 kb on + strand, within SGL_RS16460at 3142.477 kb on + strand, within SGL_RS16460at 3142.543 kb on + strand, within SGL_RS16460at 3142.551 kb on - strand, within SGL_RS16460at 3142.551 kb on - strand, within SGL_RS16460at 3142.608 kb on - strand, within SGL_RS16460at 3142.639 kb on - strand, within SGL_RS16460at 3142.639 kb on - strand, within SGL_RS16460at 3142.655 kb on + strand, within SGL_RS16460at 3142.655 kb on + strand, within SGL_RS16460at 3142.663 kb on - strandat 3142.665 kb on + strandat 3142.674 kb on - strandat 3142.747 kb on + strandat 3142.747 kb on + strandat 3142.755 kb on - strandat 3142.756 kb on - strandat 3142.761 kb on - strandat 3142.918 kb on + strandat 3142.918 kb on + strandat 3142.918 kb on + strandat 3142.926 kb on - strandat 3142.926 kb on - strandat 3142.926 kb on - strandat 3142.926 kb on - strandat 3142.926 kb on - strandat 3142.926 kb on - strandat 3142.928 kb on - strandat 3142.928 kb on - strandat 3142.928 kb on - strandat 3142.928 kb on - strandat 3142.970 kb on + strandat 3142.997 kb on + strandat 3143.005 kb on - strandat 3143.016 kb on - strandat 3143.039 kb on - strandat 3143.066 kb on - strandat 3143.066 kb on - strandat 3143.117 kb on + strand, within SGL_RS16465at 3143.158 kb on - strand, within SGL_RS16465at 3143.178 kb on + strand, within SGL_RS16465at 3143.198 kb on + strand, within SGL_RS16465at 3143.223 kb on + strand, within SGL_RS16465at 3143.225 kb on + strand, within SGL_RS16465at 3143.351 kb on + strand, within SGL_RS16465at 3143.351 kb on + strand, within SGL_RS16465at 3143.352 kb on + strand, within SGL_RS16465at 3143.475 kb on - strand, within SGL_RS16465at 3143.573 kb on - strandat 3143.577 kb on + strandat 3143.578 kb on - strandat 3143.590 kb on - strandat 3143.600 kb on - strandat 3143.715 kb on - strandat 3143.776 kb on + strand, within SGL_RS16470at 3143.933 kb on + strand, within SGL_RS16470at 3143.942 kb on - strand, within SGL_RS16470at 3143.980 kb on - strand, within SGL_RS16470at 3144.031 kb on + strand, within SGL_RS16470at 3144.032 kb on - strand, within SGL_RS16470at 3144.034 kb on - strand, within SGL_RS16470at 3144.079 kb on - strand, within SGL_RS16470at 3144.140 kb on + strandat 3144.148 kb on - strandat 3144.241 kb on - strandat 3144.242 kb on + strandat 3144.249 kb on + strandat 3144.259 kb on + strandat 3144.267 kb on - strandat 3144.280 kb on + strandat 3144.280 kb on + strandat 3144.280 kb on + strandat 3144.280 kb on + strandat 3144.288 kb on - strandat 3144.288 kb on - strandat 3144.288 kb on - strandat 3144.288 kb on - strandat 3144.355 kb on - strandat 3144.357 kb on + strandat 3144.479 kb on - strandat 3144.484 kb on + strandat 3144.486 kb on + strandat 3144.486 kb on + strandat 3144.493 kb on + strandat 3144.494 kb on - strandat 3144.505 kb on + strandat 3144.513 kb on - strandat 3144.513 kb on - strandat 3144.535 kb on - strandat 3144.561 kb on + strandat 3144.561 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 800 mM
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3,142,048 + SGL_RS16460 0.62 -0.4
3,142,056 - SGL_RS16460 0.62 +0.3
3,142,056 - SGL_RS16460 0.62 +0.1
3,142,107 + SGL_RS16460 0.64 +0.0
3,142,179 - SGL_RS16460 0.68 +0.6
3,142,216 - SGL_RS16460 0.69 -0.2
3,142,299 - SGL_RS16460 0.73 -0.3
3,142,319 - SGL_RS16460 0.74 -0.3
3,142,331 + SGL_RS16460 0.75 +0.6
3,142,376 + SGL_RS16460 0.77 -0.3
3,142,384 - SGL_RS16460 0.77 -0.3
3,142,385 + SGL_RS16460 0.77 +0.7
3,142,395 + SGL_RS16460 0.78 -0.2
3,142,438 + SGL_RS16460 0.80 -1.3
3,142,477 + SGL_RS16460 0.82 -0.3
3,142,543 + SGL_RS16460 0.85 -0.2
3,142,551 - SGL_RS16460 0.85 -0.4
3,142,551 - SGL_RS16460 0.85 -0.1
3,142,608 - SGL_RS16460 0.88 +0.0
3,142,639 - SGL_RS16460 0.89 -0.5
3,142,639 - SGL_RS16460 0.89 -0.2
3,142,655 + SGL_RS16460 0.90 +0.0
3,142,655 + SGL_RS16460 0.90 -0.6
3,142,663 - -0.1
3,142,665 + +1.1
3,142,674 - -0.2
3,142,747 + -0.1
3,142,747 + +0.3
3,142,755 - +0.7
3,142,756 - -0.4
3,142,761 - +0.2
3,142,918 + -0.1
3,142,918 + -0.4
3,142,918 + +0.0
3,142,926 - -0.2
3,142,926 - -0.0
3,142,926 - +0.1
3,142,926 - -0.2
3,142,926 - -0.0
3,142,926 - +0.2
3,142,928 - +0.1
3,142,928 - -0.1
3,142,928 - -0.1
3,142,928 - -0.1
3,142,970 + +0.9
3,142,997 + +0.5
3,143,005 - -0.3
3,143,016 - +1.4
3,143,039 - -0.0
3,143,066 - +0.0
3,143,066 - -0.0
3,143,117 + SGL_RS16465 0.19 -0.1
3,143,158 - SGL_RS16465 0.26 -0.2
3,143,178 + SGL_RS16465 0.30 -0.4
3,143,198 + SGL_RS16465 0.33 +0.1
3,143,223 + SGL_RS16465 0.38 -0.2
3,143,225 + SGL_RS16465 0.38 +0.0
3,143,351 + SGL_RS16465 0.61 -0.2
3,143,351 + SGL_RS16465 0.61 -0.4
3,143,352 + SGL_RS16465 0.61 +0.0
3,143,475 - SGL_RS16465 0.83 -0.3
3,143,573 - +0.3
3,143,577 + +0.7
3,143,578 - +0.3
3,143,590 - -0.0
3,143,600 - +0.1
3,143,715 - +0.1
3,143,776 + SGL_RS16470 0.16 +0.1
3,143,933 + SGL_RS16470 0.49 -0.4
3,143,942 - SGL_RS16470 0.51 -0.3
3,143,980 - SGL_RS16470 0.58 +0.2
3,144,031 + SGL_RS16470 0.69 -0.4
3,144,032 - SGL_RS16470 0.69 +0.6
3,144,034 - SGL_RS16470 0.70 -0.0
3,144,079 - SGL_RS16470 0.79 -0.1
3,144,140 + +0.0
3,144,148 - +0.3
3,144,241 - -0.5
3,144,242 + +0.1
3,144,249 + +0.1
3,144,259 + -0.0
3,144,267 - -0.1
3,144,280 + +0.5
3,144,280 + +0.5
3,144,280 + -0.1
3,144,280 + +0.2
3,144,288 - +0.8
3,144,288 - +0.7
3,144,288 - -0.1
3,144,288 - +0.2
3,144,355 - +0.0
3,144,357 + +0.2
3,144,479 - +0.4
3,144,484 + -0.1
3,144,486 + +0.2
3,144,486 + +1.0
3,144,493 + -0.0
3,144,494 - +0.7
3,144,505 + +0.2
3,144,513 - -0.5
3,144,513 - +0.2
3,144,535 - +0.1
3,144,561 + +0.2
3,144,561 + +0.1

Or see this region's nucleotide sequence