Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14370

Experiment: Chloride 800 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS14365 and SGL_RS14370 are separated by 145 nucleotidesSGL_RS14370 and SGL_RS14375 are separated by 60 nucleotides SGL_RS14365: SGL_RS14365 - methionine--tRNA ligase, at 2,678,140 to 2,679,738 _RS14365 SGL_RS14370: SGL_RS14370 - NYN domain-containing protein, at 2,679,884 to 2,680,489 _RS14370 SGL_RS14375: SGL_RS14375 - deoxyguanosinetriphosphate triphosphohydrolase, at 2,680,550 to 2,681,872 _RS14375 Position (kb) 2679 2680 2681Strain fitness (log2 ratio) -2 -1 0 1at 2680.033 kb on - strand, within SGL_RS14370at 2680.043 kb on - strand, within SGL_RS14370at 2680.189 kb on + strand, within SGL_RS14370at 2680.256 kb on + strand, within SGL_RS14370at 2680.941 kb on + strand, within SGL_RS14375at 2681.033 kb on + strand, within SGL_RS14375at 2681.056 kb on + strand, within SGL_RS14375at 2681.350 kb on - strand, within SGL_RS14375at 2681.358 kb on - strand, within SGL_RS14375at 2681.382 kb on - strand, within SGL_RS14375at 2681.399 kb on + strand, within SGL_RS14375

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 800 mM
remove
2,680,033 - SGL_RS14370 0.25 -1.4
2,680,043 - SGL_RS14370 0.26 -2.6
2,680,189 + SGL_RS14370 0.50 -0.9
2,680,256 + SGL_RS14370 0.61 -1.1
2,680,941 + SGL_RS14375 0.30 +0.2
2,681,033 + SGL_RS14375 0.37 -0.5
2,681,056 + SGL_RS14375 0.38 +0.1
2,681,350 - SGL_RS14375 0.60 +0.0
2,681,358 - SGL_RS14375 0.61 +0.1
2,681,382 - SGL_RS14375 0.63 +0.0
2,681,399 + SGL_RS14375 0.64 +0.1

Or see this region's nucleotide sequence