Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14015

Experiment: Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14010 and SGL_RS14015 are separated by 238 nucleotidesSGL_RS14015 and SGL_RS14020 overlap by 4 nucleotidesSGL_RS14020 and SGL_RS14025 are separated by 21 nucleotides SGL_RS14010: SGL_RS14010 - 30S ribosomal protein S4, at 2,603,947 to 2,604,555 _RS14010 SGL_RS14015: SGL_RS14015 - AI-2E family transporter, at 2,604,794 to 2,605,873 _RS14015 SGL_RS14020: SGL_RS14020 - hypothetical protein, at 2,605,870 to 2,606,073 _RS14020 SGL_RS14025: SGL_RS14025 - gamma-glutamyl-phosphate reductase, at 2,606,095 to 2,607,357 _RS14025 Position (kb) 2604 2605 2606Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2603.847 kb on + strandat 2603.851 kb on - strandat 2604.636 kb on - strandat 2604.790 kb on - strandat 2604.916 kb on + strand, within SGL_RS14015at 2604.917 kb on + strand, within SGL_RS14015at 2605.192 kb on + strand, within SGL_RS14015at 2605.193 kb on + strand, within SGL_RS14015at 2605.374 kb on + strand, within SGL_RS14015at 2605.374 kb on + strand, within SGL_RS14015at 2605.382 kb on - strand, within SGL_RS14015at 2605.429 kb on + strand, within SGL_RS14015at 2605.430 kb on + strand, within SGL_RS14015at 2605.438 kb on - strand, within SGL_RS14015at 2605.443 kb on - strand, within SGL_RS14015at 2605.444 kb on - strand, within SGL_RS14015at 2605.444 kb on - strand, within SGL_RS14015at 2605.491 kb on + strand, within SGL_RS14015at 2605.499 kb on - strand, within SGL_RS14015at 2605.576 kb on + strand, within SGL_RS14015at 2605.610 kb on + strand, within SGL_RS14015at 2605.618 kb on - strand, within SGL_RS14015at 2605.689 kb on - strand, within SGL_RS14015at 2605.701 kb on - strand, within SGL_RS14015at 2605.775 kb on - strandat 2605.952 kb on + strand, within SGL_RS14020at 2605.965 kb on - strand, within SGL_RS14020at 2606.097 kb on + strandat 2606.271 kb on - strand, within SGL_RS14025at 2606.330 kb on + strand, within SGL_RS14025at 2606.425 kb on + strand, within SGL_RS14025at 2606.484 kb on - strand, within SGL_RS14025at 2606.598 kb on - strand, within SGL_RS14025at 2606.598 kb on - strand, within SGL_RS14025at 2606.654 kb on + strand, within SGL_RS14025at 2606.693 kb on + strand, within SGL_RS14025at 2606.784 kb on - strand, within SGL_RS14025at 2606.850 kb on - strand, within SGL_RS14025

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 800 mM
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2,603,847 + +0.1
2,603,851 - +0.3
2,604,636 - +0.1
2,604,790 - -0.0
2,604,916 + SGL_RS14015 0.11 -2.0
2,604,917 + SGL_RS14015 0.11 -2.8
2,605,192 + SGL_RS14015 0.37 -4.1
2,605,193 + SGL_RS14015 0.37 -3.1
2,605,374 + SGL_RS14015 0.54 -1.9
2,605,374 + SGL_RS14015 0.54 -3.8
2,605,382 - SGL_RS14015 0.54 -2.3
2,605,429 + SGL_RS14015 0.59 -3.8
2,605,430 + SGL_RS14015 0.59 -1.4
2,605,438 - SGL_RS14015 0.60 -2.4
2,605,443 - SGL_RS14015 0.60 -2.5
2,605,444 - SGL_RS14015 0.60 -3.6
2,605,444 - SGL_RS14015 0.60 -2.8
2,605,491 + SGL_RS14015 0.65 -3.1
2,605,499 - SGL_RS14015 0.65 -2.7
2,605,576 + SGL_RS14015 0.72 -4.0
2,605,610 + SGL_RS14015 0.76 -2.3
2,605,618 - SGL_RS14015 0.76 -2.7
2,605,689 - SGL_RS14015 0.83 -2.5
2,605,701 - SGL_RS14015 0.84 -2.9
2,605,775 - -3.1
2,605,952 + SGL_RS14020 0.40 -0.5
2,605,965 - SGL_RS14020 0.47 -4.1
2,606,097 + -1.0
2,606,271 - SGL_RS14025 0.14 +0.0
2,606,330 + SGL_RS14025 0.19 -1.2
2,606,425 + SGL_RS14025 0.26 -0.6
2,606,484 - SGL_RS14025 0.31 -0.7
2,606,598 - SGL_RS14025 0.40 -1.1
2,606,598 - SGL_RS14025 0.40 -0.6
2,606,654 + SGL_RS14025 0.44 -1.2
2,606,693 + SGL_RS14025 0.47 -0.3
2,606,784 - SGL_RS14025 0.55 -1.0
2,606,850 - SGL_RS14025 0.60 -0.3

Or see this region's nucleotide sequence