Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13760

Experiment: Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13750 and SGL_RS13755 are separated by 112 nucleotidesSGL_RS13755 and SGL_RS13760 are separated by 156 nucleotidesSGL_RS13760 and SGL_RS13765 are separated by 172 nucleotides SGL_RS13750: SGL_RS13750 - hypothetical protein, at 2,552,177 to 2,552,962 _RS13750 SGL_RS13755: SGL_RS13755 - hypothetical protein, at 2,553,075 to 2,553,338 _RS13755 SGL_RS13760: SGL_RS13760 - PQ-loop repeat-containing protein, at 2,553,495 to 2,553,788 _RS13760 SGL_RS13765: SGL_RS13765 - glycolate oxidase subunit GlcD, at 2,553,961 to 2,555,439 _RS13765 Position (kb) 2553 2554Strain fitness (log2 ratio) -1 0 1at 2553.021 kb on - strandat 2553.032 kb on + strandat 2553.711 kb on - strand, within SGL_RS13760at 2554.023 kb on - strandat 2554.406 kb on + strand, within SGL_RS13765at 2554.421 kb on + strand, within SGL_RS13765at 2554.482 kb on - strand, within SGL_RS13765at 2554.554 kb on - strand, within SGL_RS13765

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 800 mM
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2,553,021 - -1.7
2,553,032 + -0.1
2,553,711 - SGL_RS13760 0.73 +0.6
2,554,023 - -0.3
2,554,406 + SGL_RS13765 0.30 +0.0
2,554,421 + SGL_RS13765 0.31 -0.5
2,554,482 - SGL_RS13765 0.35 -0.2
2,554,554 - SGL_RS13765 0.40 +0.1

Or see this region's nucleotide sequence