Experiment: Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13175 and SGL_RS13180 are separated by 200 nucleotides SGL_RS13180 and SGL_RS13185 are separated by 21 nucleotides SGL_RS13185 and SGL_RS13190 overlap by 4 nucleotides SGL_RS13190 and SGL_RS13195 overlap by 47 nucleotides
SGL_RS13175: SGL_RS13175 - GerMN domain-containing protein, at 2,422,833 to 2,423,420
_RS13175
SGL_RS13180: SGL_RS13180 - triose-phosphate isomerase, at 2,423,621 to 2,424,349
_RS13180
SGL_RS13185: SGL_RS13185 - AI-2E family transporter, at 2,424,371 to 2,425,390
_RS13185
SGL_RS13190: SGL_RS13190 - amino acid ABC transporter substrate-binding protein, at 2,425,387 to 2,426,343
_RS13190
SGL_RS13195: SGL_RS13195 - Ig-like domain-containing protein, at 2,426,297 to 2,427,787
_RS13195
Position (kb)
2424
2425
2426 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2423.381 kb on - strand at 2423.562 kb on - strand at 2424.098 kb on - strand, within SGL_RS13180 at 2424.375 kb on + strand at 2424.392 kb on + strand at 2424.392 kb on + strand at 2424.473 kb on - strand, within SGL_RS13185 at 2424.535 kb on + strand, within SGL_RS13185 at 2424.687 kb on + strand, within SGL_RS13185 at 2424.863 kb on + strand, within SGL_RS13185 at 2424.870 kb on + strand, within SGL_RS13185 at 2425.051 kb on - strand, within SGL_RS13185 at 2425.208 kb on - strand, within SGL_RS13185 at 2425.313 kb on + strand at 2425.315 kb on - strand at 2425.368 kb on - strand at 2425.478 kb on + strand at 2425.478 kb on + strand at 2425.486 kb on - strand, within SGL_RS13190 at 2425.486 kb on - strand, within SGL_RS13190 at 2425.498 kb on - strand, within SGL_RS13190 at 2425.510 kb on + strand, within SGL_RS13190 at 2425.905 kb on - strand, within SGL_RS13190 at 2426.049 kb on + strand, within SGL_RS13190 at 2426.068 kb on - strand, within SGL_RS13190 at 2426.075 kb on + strand, within SGL_RS13190 at 2426.294 kb on + strand at 2426.321 kb on - strand at 2426.357 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 800 mM remove 2,423,381 - -0.0 2,423,562 - -0.0 2,424,098 - SGL_RS13180 0.65 -2.4 2,424,375 + -2.5 2,424,392 + -2.7 2,424,392 + -1.0 2,424,473 - SGL_RS13185 0.10 -4.1 2,424,535 + SGL_RS13185 0.16 -3.2 2,424,687 + SGL_RS13185 0.31 -2.7 2,424,863 + SGL_RS13185 0.48 -2.7 2,424,870 + SGL_RS13185 0.49 -4.1 2,425,051 - SGL_RS13185 0.67 -1.8 2,425,208 - SGL_RS13185 0.82 -3.6 2,425,313 + -2.8 2,425,315 - -0.1 2,425,368 - -1.3 2,425,478 + -0.3 2,425,478 + -0.2 2,425,486 - SGL_RS13190 0.10 -0.0 2,425,486 - SGL_RS13190 0.10 -0.2 2,425,498 - SGL_RS13190 0.12 +0.0 2,425,510 + SGL_RS13190 0.13 +0.1 2,425,905 - SGL_RS13190 0.54 +0.1 2,426,049 + SGL_RS13190 0.69 +0.0 2,426,068 - SGL_RS13190 0.71 -0.2 2,426,075 + SGL_RS13190 0.72 +0.3 2,426,294 + +0.3 2,426,321 - -0.4 2,426,357 + -1.4
Or see this region's nucleotide sequence