Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13185

Experiment: Chloride 800 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS13175 and SGL_RS13180 are separated by 200 nucleotidesSGL_RS13180 and SGL_RS13185 are separated by 21 nucleotidesSGL_RS13185 and SGL_RS13190 overlap by 4 nucleotidesSGL_RS13190 and SGL_RS13195 overlap by 47 nucleotides SGL_RS13175: SGL_RS13175 - GerMN domain-containing protein, at 2,422,833 to 2,423,420 _RS13175 SGL_RS13180: SGL_RS13180 - triose-phosphate isomerase, at 2,423,621 to 2,424,349 _RS13180 SGL_RS13185: SGL_RS13185 - AI-2E family transporter, at 2,424,371 to 2,425,390 _RS13185 SGL_RS13190: SGL_RS13190 - amino acid ABC transporter substrate-binding protein, at 2,425,387 to 2,426,343 _RS13190 SGL_RS13195: SGL_RS13195 - Ig-like domain-containing protein, at 2,426,297 to 2,427,787 _RS13195 Position (kb) 2424 2425 2426Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2423.381 kb on - strandat 2423.562 kb on - strandat 2424.098 kb on - strand, within SGL_RS13180at 2424.375 kb on + strandat 2424.392 kb on + strandat 2424.392 kb on + strandat 2424.473 kb on - strand, within SGL_RS13185at 2424.535 kb on + strand, within SGL_RS13185at 2424.687 kb on + strand, within SGL_RS13185at 2424.863 kb on + strand, within SGL_RS13185at 2424.870 kb on + strand, within SGL_RS13185at 2425.051 kb on - strand, within SGL_RS13185at 2425.208 kb on - strand, within SGL_RS13185at 2425.313 kb on + strandat 2425.315 kb on - strandat 2425.368 kb on - strandat 2425.478 kb on + strandat 2425.478 kb on + strandat 2425.486 kb on - strand, within SGL_RS13190at 2425.486 kb on - strand, within SGL_RS13190at 2425.498 kb on - strand, within SGL_RS13190at 2425.510 kb on + strand, within SGL_RS13190at 2425.905 kb on - strand, within SGL_RS13190at 2426.049 kb on + strand, within SGL_RS13190at 2426.068 kb on - strand, within SGL_RS13190at 2426.075 kb on + strand, within SGL_RS13190at 2426.294 kb on + strandat 2426.321 kb on - strandat 2426.357 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 800 mM
remove
2,423,381 - -0.0
2,423,562 - -0.0
2,424,098 - SGL_RS13180 0.65 -2.4
2,424,375 + -2.5
2,424,392 + -2.7
2,424,392 + -1.0
2,424,473 - SGL_RS13185 0.10 -4.1
2,424,535 + SGL_RS13185 0.16 -3.2
2,424,687 + SGL_RS13185 0.31 -2.7
2,424,863 + SGL_RS13185 0.48 -2.7
2,424,870 + SGL_RS13185 0.49 -4.1
2,425,051 - SGL_RS13185 0.67 -1.8
2,425,208 - SGL_RS13185 0.82 -3.6
2,425,313 + -2.8
2,425,315 - -0.1
2,425,368 - -1.3
2,425,478 + -0.3
2,425,478 + -0.2
2,425,486 - SGL_RS13190 0.10 -0.0
2,425,486 - SGL_RS13190 0.10 -0.2
2,425,498 - SGL_RS13190 0.12 +0.0
2,425,510 + SGL_RS13190 0.13 +0.1
2,425,905 - SGL_RS13190 0.54 +0.1
2,426,049 + SGL_RS13190 0.69 +0.0
2,426,068 - SGL_RS13190 0.71 -0.2
2,426,075 + SGL_RS13190 0.72 +0.3
2,426,294 + +0.3
2,426,321 - -0.4
2,426,357 + -1.4

Or see this region's nucleotide sequence