Experiment: Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS12565 and SGL_RS12570 are separated by 90 nucleotides SGL_RS12570 and SGL_RS12575 are separated by 260 nucleotides SGL_RS12575 and SGL_RS19930 are separated by 224 nucleotides SGL_RS19930 and SGL_RS12585 are separated by 67 nucleotides
SGL_RS12565: SGL_RS12565 - MEKHLA domain-containing protein, at 2,278,921 to 2,279,406
_RS12565
SGL_RS12570: SGL_RS12570 - pentapeptide repeat-containing protein, at 2,279,497 to 2,280,006
_RS12570
SGL_RS12575: SGL_RS12575 - riboflavin synthase, at 2,280,267 to 2,280,947
_RS12575
SGL_RS19930: SGL_RS19930 - hypothetical protein, at 2,281,172 to 2,281,441
_RS19930
SGL_RS12585: SGL_RS12585 - ABC transporter permease subunit, at 2,281,509 to 2,283,182
_RS12585
Position (kb)
2280
2281 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2279.287 kb on + strand, within SGL_RS12565 at 2279.872 kb on + strand, within SGL_RS12570 at 2279.896 kb on - strand, within SGL_RS12570 at 2279.896 kb on - strand, within SGL_RS12570 at 2279.917 kb on + strand, within SGL_RS12570 at 2280.416 kb on - strand, within SGL_RS12575 at 2280.715 kb on + strand, within SGL_RS12575 at 2280.715 kb on + strand, within SGL_RS12575 at 2280.723 kb on - strand, within SGL_RS12575 at 2280.734 kb on - strand, within SGL_RS12575 at 2280.791 kb on + strand, within SGL_RS12575 at 2280.799 kb on - strand, within SGL_RS12575 at 2280.836 kb on + strand, within SGL_RS12575 at 2280.966 kb on - strand at 2281.039 kb on + strand at 2281.149 kb on - strand at 2281.156 kb on - strand at 2281.337 kb on + strand, within SGL_RS19930 at 2281.503 kb on - strand at 2281.548 kb on - strand at 2281.661 kb on + strand at 2281.699 kb on + strand, within SGL_RS12585 at 2281.840 kb on - strand, within SGL_RS12585 at 2281.850 kb on + strand, within SGL_RS12585 at 2281.887 kb on - strand, within SGL_RS12585 at 2281.931 kb on + strand, within SGL_RS12585
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 800 mM remove 2,279,287 + SGL_RS12565 0.75 +0.1 2,279,872 + SGL_RS12570 0.74 +0.1 2,279,896 - SGL_RS12570 0.78 +0.3 2,279,896 - SGL_RS12570 0.78 -0.6 2,279,917 + SGL_RS12570 0.82 -0.1 2,280,416 - SGL_RS12575 0.22 -3.0 2,280,715 + SGL_RS12575 0.66 -1.4 2,280,715 + SGL_RS12575 0.66 -2.6 2,280,723 - SGL_RS12575 0.67 -1.0 2,280,734 - SGL_RS12575 0.69 -2.8 2,280,791 + SGL_RS12575 0.77 -2.0 2,280,799 - SGL_RS12575 0.78 -3.0 2,280,836 + SGL_RS12575 0.84 -1.6 2,280,966 - -0.0 2,281,039 + -0.1 2,281,149 - -2.2 2,281,156 - +0.4 2,281,337 + SGL_RS19930 0.61 -1.1 2,281,503 - +0.4 2,281,548 - -3.6 2,281,661 + -1.6 2,281,699 + SGL_RS12585 0.11 -2.6 2,281,840 - SGL_RS12585 0.20 -2.6 2,281,850 + SGL_RS12585 0.20 -3.8 2,281,887 - SGL_RS12585 0.23 -2.0 2,281,931 + SGL_RS12585 0.25 -3.0
Or see this region's nucleotide sequence