Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12575

Experiment: Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12565 and SGL_RS12570 are separated by 90 nucleotidesSGL_RS12570 and SGL_RS12575 are separated by 260 nucleotidesSGL_RS12575 and SGL_RS19930 are separated by 224 nucleotidesSGL_RS19930 and SGL_RS12585 are separated by 67 nucleotides SGL_RS12565: SGL_RS12565 - MEKHLA domain-containing protein, at 2,278,921 to 2,279,406 _RS12565 SGL_RS12570: SGL_RS12570 - pentapeptide repeat-containing protein, at 2,279,497 to 2,280,006 _RS12570 SGL_RS12575: SGL_RS12575 - riboflavin synthase, at 2,280,267 to 2,280,947 _RS12575 SGL_RS19930: SGL_RS19930 - hypothetical protein, at 2,281,172 to 2,281,441 _RS19930 SGL_RS12585: SGL_RS12585 - ABC transporter permease subunit, at 2,281,509 to 2,283,182 _RS12585 Position (kb) 2280 2281Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2279.287 kb on + strand, within SGL_RS12565at 2279.872 kb on + strand, within SGL_RS12570at 2279.896 kb on - strand, within SGL_RS12570at 2279.896 kb on - strand, within SGL_RS12570at 2279.917 kb on + strand, within SGL_RS12570at 2280.416 kb on - strand, within SGL_RS12575at 2280.715 kb on + strand, within SGL_RS12575at 2280.715 kb on + strand, within SGL_RS12575at 2280.723 kb on - strand, within SGL_RS12575at 2280.734 kb on - strand, within SGL_RS12575at 2280.791 kb on + strand, within SGL_RS12575at 2280.799 kb on - strand, within SGL_RS12575at 2280.836 kb on + strand, within SGL_RS12575at 2280.966 kb on - strandat 2281.039 kb on + strandat 2281.149 kb on - strandat 2281.156 kb on - strandat 2281.337 kb on + strand, within SGL_RS19930at 2281.503 kb on - strandat 2281.548 kb on - strandat 2281.661 kb on + strandat 2281.699 kb on + strand, within SGL_RS12585at 2281.840 kb on - strand, within SGL_RS12585at 2281.850 kb on + strand, within SGL_RS12585at 2281.887 kb on - strand, within SGL_RS12585at 2281.931 kb on + strand, within SGL_RS12585

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 800 mM
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2,279,287 + SGL_RS12565 0.75 +0.1
2,279,872 + SGL_RS12570 0.74 +0.1
2,279,896 - SGL_RS12570 0.78 +0.3
2,279,896 - SGL_RS12570 0.78 -0.6
2,279,917 + SGL_RS12570 0.82 -0.1
2,280,416 - SGL_RS12575 0.22 -3.0
2,280,715 + SGL_RS12575 0.66 -1.4
2,280,715 + SGL_RS12575 0.66 -2.6
2,280,723 - SGL_RS12575 0.67 -1.0
2,280,734 - SGL_RS12575 0.69 -2.8
2,280,791 + SGL_RS12575 0.77 -2.0
2,280,799 - SGL_RS12575 0.78 -3.0
2,280,836 + SGL_RS12575 0.84 -1.6
2,280,966 - -0.0
2,281,039 + -0.1
2,281,149 - -2.2
2,281,156 - +0.4
2,281,337 + SGL_RS19930 0.61 -1.1
2,281,503 - +0.4
2,281,548 - -3.6
2,281,661 + -1.6
2,281,699 + SGL_RS12585 0.11 -2.6
2,281,840 - SGL_RS12585 0.20 -2.6
2,281,850 + SGL_RS12585 0.20 -3.8
2,281,887 - SGL_RS12585 0.23 -2.0
2,281,931 + SGL_RS12585 0.25 -3.0

Or see this region's nucleotide sequence