Experiment: Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11390 and SGL_RS11395 overlap by 1 nucleotides SGL_RS11395 and SGL_RS11400 are separated by 62 nucleotides SGL_RS11400 and SGL_RS11405 are separated by 15 nucleotides
SGL_RS11390: SGL_RS11390 - branched-chain amino acid ABC transporter permease, at 2,017,104 to 2,017,964
_RS11390
SGL_RS11395: SGL_RS11395 - TlyA family RNA methyltransferase, at 2,017,964 to 2,018,788
_RS11395
SGL_RS11400: SGL_RS11400 - hypothetical protein, at 2,018,851 to 2,019,237
_RS11400
SGL_RS11405: SGL_RS11405 - tetratricopeptide repeat protein, at 2,019,253 to 2,020,344
_RS11405
Position (kb)
2018
2019
2020 Strain fitness (log2 ratio)
-1
0
1 at 2017.946 kb on + strand at 2017.946 kb on + strand at 2018.012 kb on + strand at 2018.030 kb on + strand at 2018.189 kb on - strand, within SGL_RS11395 at 2018.310 kb on - strand, within SGL_RS11395 at 2018.402 kb on + strand, within SGL_RS11395 at 2018.408 kb on - strand, within SGL_RS11395 at 2018.415 kb on - strand, within SGL_RS11395 at 2018.564 kb on + strand, within SGL_RS11395 at 2018.597 kb on + strand, within SGL_RS11395 at 2018.610 kb on + strand, within SGL_RS11395 at 2018.643 kb on - strand, within SGL_RS11395 at 2018.866 kb on - strand at 2019.031 kb on + strand, within SGL_RS11400 at 2019.872 kb on + strand, within SGL_RS11405
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 800 mM remove 2,017,946 + -0.1 2,017,946 + +0.2 2,018,012 + +0.2 2,018,030 + +0.5 2,018,189 - SGL_RS11395 0.27 -0.4 2,018,310 - SGL_RS11395 0.42 +0.4 2,018,402 + SGL_RS11395 0.53 +0.5 2,018,408 - SGL_RS11395 0.54 +0.6 2,018,415 - SGL_RS11395 0.55 +0.1 2,018,564 + SGL_RS11395 0.73 +0.3 2,018,597 + SGL_RS11395 0.77 +0.3 2,018,610 + SGL_RS11395 0.78 +0.3 2,018,643 - SGL_RS11395 0.82 +0.6 2,018,866 - +0.1 2,019,031 + SGL_RS11400 0.47 -0.3 2,019,872 + SGL_RS11405 0.57 -0.0
Or see this region's nucleotide sequence