Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11400

Experiment: Chloride 800 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11390 and SGL_RS11395 overlap by 1 nucleotidesSGL_RS11395 and SGL_RS11400 are separated by 62 nucleotidesSGL_RS11400 and SGL_RS11405 are separated by 15 nucleotides SGL_RS11390: SGL_RS11390 - branched-chain amino acid ABC transporter permease, at 2,017,104 to 2,017,964 _RS11390 SGL_RS11395: SGL_RS11395 - TlyA family RNA methyltransferase, at 2,017,964 to 2,018,788 _RS11395 SGL_RS11400: SGL_RS11400 - hypothetical protein, at 2,018,851 to 2,019,237 _RS11400 SGL_RS11405: SGL_RS11405 - tetratricopeptide repeat protein, at 2,019,253 to 2,020,344 _RS11405 Position (kb) 2018 2019 2020Strain fitness (log2 ratio) -1 0 1at 2017.946 kb on + strandat 2017.946 kb on + strandat 2018.012 kb on + strandat 2018.030 kb on + strandat 2018.189 kb on - strand, within SGL_RS11395at 2018.310 kb on - strand, within SGL_RS11395at 2018.402 kb on + strand, within SGL_RS11395at 2018.408 kb on - strand, within SGL_RS11395at 2018.415 kb on - strand, within SGL_RS11395at 2018.564 kb on + strand, within SGL_RS11395at 2018.597 kb on + strand, within SGL_RS11395at 2018.610 kb on + strand, within SGL_RS11395at 2018.643 kb on - strand, within SGL_RS11395at 2018.866 kb on - strandat 2019.031 kb on + strand, within SGL_RS11400at 2019.872 kb on + strand, within SGL_RS11405

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 800 mM
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2,017,946 + -0.1
2,017,946 + +0.2
2,018,012 + +0.2
2,018,030 + +0.5
2,018,189 - SGL_RS11395 0.27 -0.4
2,018,310 - SGL_RS11395 0.42 +0.4
2,018,402 + SGL_RS11395 0.53 +0.5
2,018,408 - SGL_RS11395 0.54 +0.6
2,018,415 - SGL_RS11395 0.55 +0.1
2,018,564 + SGL_RS11395 0.73 +0.3
2,018,597 + SGL_RS11395 0.77 +0.3
2,018,610 + SGL_RS11395 0.78 +0.3
2,018,643 - SGL_RS11395 0.82 +0.6
2,018,866 - +0.1
2,019,031 + SGL_RS11400 0.47 -0.3
2,019,872 + SGL_RS11405 0.57 -0.0

Or see this region's nucleotide sequence