Experiment: Chloride 800 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11235 and SGL_RS11240 are separated by 577 nucleotides SGL_RS11240 and SGL_RS11245 are separated by 34 nucleotides SGL_RS11245 and SGL_RS11250 are separated by 32 nucleotides
SGL_RS11235: SGL_RS11235 - hybrid sensor histidine kinase/response regulator, at 1,980,365 to 1,981,471
_RS11235
SGL_RS11240: SGL_RS11240 - photosystem I reaction center subunit IV, at 1,982,049 to 1,982,273
_RS11240
SGL_RS11245: SGL_RS11245 - DNA-formamidopyrimidine glycosylase, at 1,982,308 to 1,983,171
_RS11245
SGL_RS11250: SGL_RS11250 - NUDIX domain-containing protein, at 1,983,204 to 1,983,932
_RS11250
Position (kb)
1982
1983 Strain fitness (log2 ratio)
-1
0
1 at 1981.131 kb on + strand, within SGL_RS11235 at 1981.144 kb on - strand, within SGL_RS11235 at 1981.206 kb on + strand, within SGL_RS11235 at 1981.264 kb on - strand, within SGL_RS11235 at 1981.358 kb on - strand, within SGL_RS11235 at 1981.407 kb on - strand at 1981.417 kb on - strand at 1981.635 kb on + strand at 1981.794 kb on - strand at 1981.877 kb on + strand at 1981.926 kb on - strand at 1982.067 kb on + strand at 1982.214 kb on - strand, within SGL_RS11240 at 1982.368 kb on - strand at 1982.553 kb on + strand, within SGL_RS11245 at 1982.597 kb on + strand, within SGL_RS11245 at 1982.617 kb on + strand, within SGL_RS11245 at 1982.625 kb on - strand, within SGL_RS11245 at 1982.649 kb on - strand, within SGL_RS11245 at 1982.731 kb on - strand, within SGL_RS11245 at 1982.930 kb on + strand, within SGL_RS11245 at 1982.956 kb on - strand, within SGL_RS11245 at 1982.998 kb on - strand, within SGL_RS11245 at 1983.062 kb on - strand, within SGL_RS11245 at 1983.089 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 800 mM remove 1,981,131 + SGL_RS11235 0.69 +0.0 1,981,144 - SGL_RS11235 0.70 +0.1 1,981,206 + SGL_RS11235 0.76 +0.3 1,981,264 - SGL_RS11235 0.81 +0.4 1,981,358 - SGL_RS11235 0.90 -0.1 1,981,407 - +0.1 1,981,417 - -0.6 1,981,635 + -0.0 1,981,794 - +0.6 1,981,877 + +0.0 1,981,926 - -0.7 1,982,067 + -1.0 1,982,214 - SGL_RS11240 0.73 -1.4 1,982,368 - -0.2 1,982,553 + SGL_RS11245 0.28 +0.4 1,982,597 + SGL_RS11245 0.33 +0.7 1,982,617 + SGL_RS11245 0.36 -0.4 1,982,625 - SGL_RS11245 0.37 +0.1 1,982,649 - SGL_RS11245 0.39 +0.8 1,982,731 - SGL_RS11245 0.49 +0.1 1,982,930 + SGL_RS11245 0.72 +0.1 1,982,956 - SGL_RS11245 0.75 +0.1 1,982,998 - SGL_RS11245 0.80 +0.6 1,983,062 - SGL_RS11245 0.87 -0.3 1,983,089 + +0.2
Or see this region's nucleotide sequence